 |
Information for unigene UN84727
| FASTA Sequence |
| Unigene ID: UN84727 | Length: 687 |
SSR | | CGGCACGAGGAAGCCCTAAAGACTTGGGAGTCGAACTCTGGTGATCTCTCTCTCTCGTCAGGAGGATCTTCGTTAATAATGGCTTG
CTTGCGTGGTATCTCGAAGAGAGTTAATCTCTTACAGAGGCGAGCATACCCAACGTGTGGTCATCTCATCAGTAACGACAAAGATG
AAACTAAACCAAGTTCTGATGCAGTGATGATCCCTAAACTCTTTGGGGCTAACAACAAGCTTACCTCTATGTTTACGGAGAGGCAA
TTTGCTGCTCCCTTGGGTCTTGGATTGTCTTCGTCGTTTCGGTACATGAGCTCCTCCTCTACTACACCACCACCTGAATGGTCTGA
TAAAGTTGACGGTATCGACTTTGTTGCACCTCAAGTCGTACCTGATCAGATCGTTGAAGCTGTGACGATGACAAGCCAAGCGGTTC
CTGCTGTGAACGAGGTTGCTATTGCAGCTGCGGATTCTGCTTTTCCTGTTGCTGCTTTGCAGCATTTGATTGATGGTGTCCATTCC
TTTACTGGCTTGAACTGGTGGGCTTCGATAGCTTTGACTACTGTGCTCATTCGTGGAGTTACAATTCCCATTCTTTTGAAAATCAC
TTAGGCTACTTACAAACTCAATCTTCTGAGGCCCTCACTGGAGGAGCTAAAGACAGAGATGGGCAATAAGGGTACTGATCCTGAA
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002880242 hypothetical protein ARALYDRAFT_483801 [Arabidopsis lyrata subsp. lyrata] | 719 | 5e-074 |
| NP_182170 inner membrane OXA1-like protein [Arabidopsis thaliana] | 710 | 6e-073 |
| XP_002297976 inner membrane protein [Populus trichocarpa] | 336 | 1e-029 |
| XP_002509958 cytochrome oxidase biogenesis protein, putative [Ricinus communis] | 317 | 2e-027 |
| XP_002866467 hypothetical protein ARALYDRAFT_496379 [Arabidopsis lyrata subsp. lyrata] | 298 | 3e-025 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SKD3 Mitochondrial inner membrane protein OXA1-like | 710 | 3e-074 |
| Q42191 Mitochondrial inner membrane protein OXA1 | 288 | 2e-025 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9GL61 Inner membrane protein | 336 | 9e-030 |
| B9RCS4 Cytochrome oxidase biogenesis protein, putative | 317 | 1e-027 |
| Q0DVR8 Os03g0116000 protein | 293 | 9e-025 |
| B8ALV2 Putative uncharacterized protein | 278 | 5e-023 |
| B9SWW1 Cytochrome oxidase biogenesis protein, putative | 277 | 7e-023 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G46470.1 OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE) | 710 | 3e-075 |
| AT5G62050.1 OXA1; P-P-bond-hydrolysis-driven protein transmembrane transporter | 288 | 2e-026 |
| AT3G49150.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein insertion into membrane; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), 60 kDa inner membrane insertion protein (InterPro:IPR001708), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G59240.1); Has 1228 Blast hits to 1197 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 2; Plants - 1199; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 161 | 1e-011 |
| AT1G65080.1 OXA1 family protein | 117 | 2e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
| Unigene Members | |
 |
|
|
