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Information for unigene UN84933
| FASTA Sequence |
| Unigene ID: UN84933 | Length: 807 |
SSR | | TCTCTCTCTCCTCTTCTTAATCTCTTTTGTGTTCTGCAATATTAGAAACACAACACCAAACCAAATGGGTTCAATGTCAAACCCTA
ACCCATGGTCTCCATACGACTCCTACAACGACTGCTCCCAAGGAGTTTGCAACCTCTACTGCCCACAGTGGTGCTACCTAATCTTC
CCTCCTCCTCCTCCTTCCTTCCTCGACTACGACGAAGACTCCTCTCCCTCCACCTTCTCCCCTCTCCTCATCGCCCTCATCGGTAT
CCTCGCCACCGCCTTCATCCTCGTCACCTACTACACACTCATCTCTAAATACTGCCACCGCGGCCGCGGCGAAACCTCCTCCTCAT
CGGAACCTCCCGGCGGCGGTGTATCCACCTCCAACGCCGCGGCGGTGGCGGGAGATGGACTCAACGACGCTCTGATCAAATCGATA
ACGGTTTATAAGTACAAGAAGGGAGATGGATACGTGGACGGCTCTGATTGCTCCGTTTGTTTGAGTGAGTTCGAAGAGGACGAGAG
CTTGAGGCTGTTGCCGAAATGCAACCACGCGTTCCACCTCCCGTGTATCGACACGTGGCTGAGATCTCACTCTAACTGCCCTCTCT
GCCGCGCCTTCGTCACCACCGCCGAGAGGATCAATCCCATCGCTAACCAATCTAACGCCGTTCATCCGATCGCGACGGAGTCTGTT
AACCGCCGTGGCGGCGGAGGAGGAGCCGCGGAGGTTAATTTAACTGCGGCTGAGTACAATCACCAAACCGGCGATTCCGTCGTCGA
GGATCTGGAAATCGGATCGCGATCGCAATCGCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_197262 RING-H2 finger protein ATL52 [Arabidopsis thaliana] | 859 | 4e-090 |
| BAE98353 RING-H2 zinc finger protein-like [Arabidopsis thaliana] | 859 | 4e-090 |
| XP_002873838 hypothetical protein ARALYDRAFT_488627 [Arabidopsis lyrata subsp. lyrata] | 858 | 5e-090 |
| XP_002524006 ring finger protein, putative [Ricinus communis] | 654 | 2e-066 |
| XP_002319229 predicted protein [Populus trichocarpa] | 647 | 2e-065 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LF64 Probable RING-H2 finger protein ATL5G | 859 | 2e-091 |
| Q9SRQ8 RING-H2 finger protein ATL3A | 393 | 2e-037 |
| Q8LFY8 RING-H2 finger protein ATL1O | 301 | 1e-026 |
| Q9LX93 RING-H2 finger protein ATL5F | 299 | 2e-026 |
| P0C041 Putative RING-H2 finger protein ATL4H | 269 | 5e-023 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WWZ5 RING-H2 zinc finger protein-like (Fragment) | 859 | 3e-090 |
| B9SDD7 Ring finger protein, putative | 654 | 2e-066 |
| B9I6S0 Predicted protein (Fragment) | 647 | 1e-065 |
| B9IPY8 Predicted protein | 632 | 6e-064 |
| B9GZ88 Predicted protein | 606 | 6e-061 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G17600.1 zinc finger (C3HC4-type RING finger) family protein | 859 | 2e-092 |
| AT3G03550.1 zinc finger (C3HC4-type RING finger) family protein | 393 | 2e-038 |
| AT1G72220.1 zinc finger (C3HC4-type RING finger) family protein | 301 | 9e-028 |
| AT4G33565.1 protein binding / zinc ion binding | 301 | 9e-028 |
| AT5G10380.1 RING1; protein binding / ubiquitin-protein ligase/ zinc ion binding | 299 | 2e-027 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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