RadishBase

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Information for unigene UN00320

FASTA Sequence

Unigene ID: UN00320	Length: 1095	SSR
GCTAATTGCTTATTTATTAGAACCCCTAACATCCGAGATACAAACACATCACAAAGGAAAAGTTTGTAACATATATTTTTGGGCTT TGATAAATATCATTAATAAAAGCATACATTTAATAAATCTATCATAAACATGAAAAAAGGAAACAGAGAGAGAGAGTGTGAGAGAG ACTGTAGATTACAATCAACTCATCTCCTAGTCTCTTGTGTATATCCATACATCTCTATTGCTTTGGGTGAGAGTATTCCTAAGGAT CTGAATACGTGATCAACTGTGTTTGTGTTCTAGAGTAACAATAAGCTATAACCATTTGACTGATGCCGCCTCCAAATGTCTCCCAC TCACTCATCATCACCTCCTTCCTCCGAGTTGTCCTGCTCTTCGACCTGGGTTTCTTGAAAACTGGATCTGCAAATTTTTGGAGTCC GGTTCATTTTCATCCATTCTATAGCCTTGCAGGGCGGTACGAGCAGTTGCTGCACATGCAGGGCTTTCAAAATCAACAAAACATAG AACAACAGGATCTCCATTCCTTTGCTTTGTATCTTTGGTCACAAGTCTCGCTTCTTTATATCCCAAAAATGGTCGAAATATATGAG ATACTTCCCTCCTGGAGCAATTAGAAGGAAGTCCTTCAACAAATAGAGTGTTGGATGCATCTGGAGGTAGACGAAGCAGTTCCCTT CCAGGCCTCCTACCAACTAAATCTTGTTGACCAAAACCCAAATCTCGACCATTTGGAGGCCCAAAATCTGGATGCTGAACTCCACC ACGCCCAGACATAAGCTCACCCATGTCACCTCCTCCTCTGCCGACACCATGAAACCGACCAGCTTCTTCAGATGGCCTAGAAGACG TTTGCGCACTCTGAAGGTAGCGATCATAAGCTGAGCCAATAGTTCTCGTATCTCTTACTGAATGAAGGATACCTCGATCCTCATCC CGTGACACGTAATCATGTTCGAAGTCAGAACGGTGACGTTTCAGAGGACCTCCGTGGGAGATCGACGACATCGGAGGCTGGTTCCA GTACCCATCTCCCATTGACGACGACGGCGACTGAAACAAATACTTTCTAATTTTCGCTCCCCT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_173554 nucleic acid/nucleotide binding protein [Arabidopsis thaliana]	728	1e-074
NP_001154354 nucleic acid/nucleotide binding protein [Arabidopsis thaliana]	728	1e-074
NP_177820 RNA recognition motif-containing protein [Arabidopsis thaliana]	662	5e-067
XP_002889109 RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]	627	6e-063
ACU23298 unknown [Glycine max]	589	1e-058

Swiss-Prot top hits (Blast detail)	Score	e value
Q9W6I1 RNA-binding protein with multiple splicing	130	1e-006
Q4WJT7 Multiple RNA-binding domain-containing protein 1	127	2e-006
Q9WVB0 RNA-binding protein with multiple splicing	127	2e-006
Q9YGP5 RNA-binding protein with multiple splicing	127	2e-006
Q93062 RNA-binding protein with multiple splicing	125	4e-006

TrEMBL top hits (Blast detail)	Score	e value
A1A6K6 At1g76940	662	3e-067
C6TK58 Putative uncharacterized protein	589	1e-058
B9I1Z7 Predicted protein	505	5e-049
Q8GYL1 Putative uncharacterized protein At1g76940/F22K20_23	500	2e-048
B9GTK9 Predicted protein	448	2e-042

Arabidopsis top hits (Blast detail)	Score	e value
AT1G21320.2 nucleic acid binding / nucleotide binding	757	2e-080
AT1G21320.1 nucleic acid binding / nucleotide binding	729	3e-077
AT1G76940.1 RNA recognition motif (RRM)-containing protein	662	2e-069
AT3G13700.2 RNA-binding protein, putative	122	8e-007

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	1			50%


9	1			50%

Unigene Members	Member information