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Information for unigene UN05172

FASTA Sequence
Unigene ID: UN05172Length: 934 SSR 
CCACAAATGCATCCAATCCATTCAAACATATAGTGTAATTAGGTGCGTGTAACTTTGTTCACTCCAAAAGCATGCAATCCACGAGA
CAAAAAGTATAACAATGGCAAATAAAAATTAGACAGAAATAAAAAGGTAATATAGAATTCAAAGCTAAAGAGATGACATCATTGAT
TTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTGGTTGTTGTTGTTTCTCCTTGTGACATATATCACTTAGATGCGGCAGTTTCATA
GTCAATAACGGTTTGAAAGGCTCCAGCAAGAGCCAAAACTTTGTTCTTCCTTGGATTCTCTTGCATCTTACTTGCTATTACATCGT
TGTAGGCCGATGGAGATTCCTTCTTACCTTTCACTATTTCCTTCTTCTTTCCTTCTCCTGATTCTTCTTTAATTTTATCCTTTTCC
TTTTCCTCATCTTTAACCTCTTCCTTCTCTTCTCTGTTCACTTCCTTTTCTTCTTCCACTTCTTCTTTTTCTTCCCTAGTCTCTTT
CACGCTTTCAACTTCTTCGACCTTCTCAACTTCTTTTGGTTTCATGTCAGCATCGACCTTCTCTGAAGTCTCACCTTCATCAATCT
TTGGTATAACCTCTAGATCAGTGAGTTCACCCTTGTTCTCTTGTTCTTTCTTTTCCTCTATCTTCTCTTCTGAGTTATGTTCATTG
ACCAATATTTCTTCTTCTTCTTCTTCTCTTTCATTTTCTTTGGCAACAACAACAACAATGTCTTCCACCACAGGAGCTACCAATGT
TGATCCATCATTCTCATTCTCTTCACCAAAAGCATCCCCATGCACAACCTCTACACGCACCTCTTTATTTTCCTTTTCATCTTTGG
CTTCTTCTATATCATCAGCAACTTGTACATCACTCTCAACCTCGGGAATCTCCTCTTCATCTTCCTGAGCAAAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002872132 hypothetical protein ARALYDRAFT_489351 [Arabidopsis lyrata subsp. lyrata]5621e-055
XP_002871431 hypothetical protein ARALYDRAFT_909022 [Arabidopsis lyrata subsp. lyrata]4384e-041
NP_197870 uncharacterized protein [Arabidopsis thaliana]4251e-039
ABK28277 unknown [Arabidopsis thaliana]4251e-039
NP_196627 calmodulin-binding protein-like protein [Arabidopsis thaliana]3632e-032

Swiss-Prot top hits (Blast detail)Scoree value
Q75JC9 Uncharacterized protein DDB_G02716702284e-018

TrEMBL top hits (Blast detail)Scoree value
A0MFH7 Putative uncharacterized protein (Fragment)4258e-040
Q3E966 Putative uncharacterized protein4258e-040
Q9FT66 At5g106603631e-032
Q3MJK9 Cement protein 3B variant 12294e-017
A9V1U7 Predicted protein2232e-016

Arabidopsis top hits (Blast detail)Scoree value
AT5G24880.1 INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: calmodulin-binding protein-related (TAIR:AT5G10660.1); Has 195834 Blast hits to 92446 proteins in 2480 species: Archae - 1007; Bacteria - 19200; Metazoa - 85171; Fungi - 18359; Plants - 7291; Viruses - 1072; Other Eukaryotes - 63734 (source: NCBI BLink).5545e-057
AT5G10660.1 calmodulin-binding protein-related3645e-035
AT5G55660.1 LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26630.2); Has 348612 Blast hits to 121147 proteins in 2910 species: Archae - 1231; Bacteria - 38190; Metazoa - 148268; Fungi - 42547; Plants - 15024; Viruses - 2447; Other Eukaryotes - 100905 (source: NCBI BLink).1934e-015
AT2G22795.1 unknown protein1702e-012
AT5G60030.1 unknown protein1674e-012

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  25%
 
62  50%
 
111  25%

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