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Information for unigene UN06238

FASTA Sequence
Unigene ID: UN06238Length: 1150 SSR 
TCCATTACATGTTACAGGGAGCTCCGCTGTTGCCTCTACAACTCTCTCTCTCTCTATCTCCATGGCTCTCGCGTTTCAGTTCTGCC
GATTATGCATCCGCCCGAATACTTTCTCCCCCGGATCCGGATCCGGATCCGGATCCAACCGCCGTCGGAAACCTTCATCACTCCGG
TGCTCGGCTGCCAACGAGGAAGCTCCTTCGCCATCTGTGGTGATGGACTCCGACTTCGACGCCAAGACGTTCCGTAGGAACTTAAC
AAGAAGCGATAATTACAATCGCAAAGGGTTTGGTCACAAGGAGGAGACCCTCAAGCTCATGAATCGCGAGTACACCAGTGATGTGT
TGGAGACGCTGAAAGCAAATGGGTATACGTACTCTTGGGGAGATGTTACCGTGAAGCTAGCCAAAGCTTATGGCTTTTGCTGGGGT
GTTGAGCGTGCTGTTCAGATTGCTTATGAAGCAAGAAGGCAGTTTCCTGAGGAGAAGCTTTGGATTACTAACGAGATTATTCATAA
CCCCACTGTCAATAAGAGGTTAGAAGAAATGGATGTTCAGATAATTCCCGTTGAGGATTCGAAGAAGCAGTTTGATGTGGTGGATA
AAGATGACGTGGTGATCCTTCCTGCGTTTGGAGCTGGTGTTGATGAGATGTATGTTCTTAATGATAAGAAGTTCAAATCGTCGACA
CCACTTGTCCTTGGGTCACAAAGGTGTGGGATGGTTGAGAAGCACAAGAAGGGAGAATATACATCGATCATTCACGGTAAATATAA
TCATGAGAGACCATTGCAACCGCATCTTTGCAGGAAGTACATCATTGTAAAGAACATGAAAGAGGCGAATTACGTTTGTGATTACA
TTCTTGGTGGTGAACTCGATGGGTCTAGCTCCACAAAAGAGGAATTCATGGAGAAATTCAAATATGCTGTGTCAAAGGGTTTTGAC
CCTGACAATGACCTTATCAAAGTGGGTATTGCAAACCAAACTACAATGCTCAAGGGAGAAACAGAGGAGATTGGAAAATTAATTGA
GAGGACAATGATGCGAAAGTATGGAGTGGAAAACGTAATGGACATTTCATCAGCTTCACACATATGCGACGCTACTCAGAGAGCAG
ATGCATCTATGAGCTAGTGGAGAGAGATGACT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ33798 unnamed protein product [Thellungiella halophila]14807e-162
AAW82381 chloroplast 1-hydroxy-2-methyl-butenyl 4-diphosphate reductase [Arabidopsis thaliana]14512e-158
NP_567965 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Arabidopsis thaliana]14502e-158
XP_002867122 hypothetical protein ARALYDRAFT_491231 [Arabidopsis lyrata subsp. lyrata]14458e-158
CAB36712 putative protein [Arabidopsis thaliana]14271e-155

Swiss-Prot top hits (Blast detail)Scoree value
B0JVA7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase8461e-089
B1WTZ2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase8414e-089
P58674 4-hydroxy-3-methylbut-2-enyl diphosphate reductase8352e-088
Q3M8X6 4-hydroxy-3-methylbut-2-enyl diphosphate reductase8352e-088
B7KEG3 4-hydroxy-3-methylbut-2-enyl diphosphate reductase8201e-086

TrEMBL top hits (Blast detail)Scoree value
Q5EGH0 Chloroplast 1-hydroxy-2-methyl-butenyl 4-diphosphate reductase14511e-158
Q94B35 ISPH14502e-158
Q9SZ00 Putative uncharacterized protein AT4g3435014277e-156
D2CFT5 Hydroxymethylbutenyl diphosphate reductase12305e-133
B9RZD3 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative12181e-131

Arabidopsis top hits (Blast detail)Scoree value
AT4G34350.1 HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE); 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase/ 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase14508e-161

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  40%
 
122  40%
 
61  20%

Unigene MembersMember information