RadishBase

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Information for unigene UN06923

FASTA Sequence

Unigene ID: UN06923	Length: 1211	SSR
GGGAGACGTACATTACGGTGCCTACCTTCTTCAAGTGTCCCATATCTCTCGACGTGATGAGATCTCCCGTCAGTCTCTGCACCGGC GTCACCTACGATCGTCCAAGCATCCAGCGGTGGCTCGACGGAGGCAACAGCACTTGCCCCGCCACTATGCAGATTCTCAAATCGAA GGATCTCGTTCCCAACCTCACTCTCCAACGGCTCATCAGAGCCTGGTCCGATTCCGTCGGTGGTGGTTCTCCGGATCCGTCGTCTA CTCTAGAGATTCCGACGGCGGAAGAAGTGAACGATTCGTTGACAAGACTGAGTAGTATCGAGAAGGACGACGACGACGACGAGATT CGTCTGGAGATTTTATCGAGGATCGTTCGATTCGTTAAGGATTCGGAAGCGAACAGAGAGTTTTTTCTCTCGGAGAGAAAGGATCT CGTAGTGCCAATGCTCGTCGATATCGTGGCGACGGCGAAGAAGATCGAGCTAGTTCTTCTAGCGGTTAAGGTTTTGGATGCTATAA TCAAGAAAGGAGATCGAGAACGGTTATCGAATCTGATGTTGACCAACGGTGGTGGAGGAGGAGATTGTCTAACGGCGATTCTCCTC GCGATTCAGCGCGGGGATCTGGAGTCGAAGATCGAAGCCGTTAGGGTTTTGGAGGTGATCTCCTCCGTCGATATCGAAATCGAGGA TGACGGTCGCGGAACGCGACGGGATTCTAACGGAGCTGATCGGATCAATCGGCACCGAGTCGGATCCTAACCTGATCGAAGCGAGT CTATCGTTCCTAATCGAAATCTCGAAATCGAAACGAGTGAGATCGAAACTAATCGCGGCGAAGACGATCGCGAGGATCAGAGACGT TCTAATAACGGAGGAGACGACGACGAGCGTCGTCGCGGTGACGGAGAAATCTCTGAAGCTGCTGGAGATACTGTCGTCGAAGCGGG AAGGTAGATCGGAGATTTGCGGCGGCGGATGCGTGGAGGGAGTGGTGAAGAAGCTGTTGAAAGTGTCGACGACGGCGACGGAGCAC GCCGTTACGATTCTGTGGTGTCTGTGTCACGTGTTCAAGGAAGATAAGACGGTTGAGGAGACGGTGGAGAGAAGTAACGGCGTGAC GAAGCTGTTAGTGGTGATTCAGAGCAACTGCTCGCCGATGGTGAGGCAAATGGCGAAGGATTTGATAAAGGTTTGAAGGTCAAGCC TCGTGCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002885274 U-box domain-containing protein [Arabidopsis lyrata subsp. lyrata]	762	1e-078
NP_188501 U-box domain-containing protein 29 [Arabidopsis thaliana]	703	1e-071
BAC42613 unknown protein [Arabidopsis thaliana]	703	1e-071
ACA61626 hypothetical protein AP9_G11.1 [Arabidopsis lyrata subsp. petraea]	681	4e-069
NP_201271 U-box domain-containing protein 27 [Arabidopsis thaliana]	526	3e-051

Swiss-Prot top hits (Blast detail)	Score	e value
Q9LSA6 U-box domain-containing protein 29	703	4e-073
Q9FLF4 U-box domain-containing protein 27	526	1e-052
Q9LXE3 U-box domain-containing protein 28	505	4e-050
Q9C8D1 U-box domain-containing protein 20	262	6e-022
Q5PNY6 U-box domain-containing protein 21	240	2e-019

TrEMBL top hits (Blast detail)	Score	e value
B1PBZ4 Putative uncharacterized protein	681	2e-069
A5C444 Putative uncharacterized protein	480	5e-046
B9HEI4 Photoperiod-response-like protein	434	1e-040
B9RU03 E3 ubiquitin ligase PUB14, putative	368	5e-033
Q9AR60 Photoperiod responsive protein	352	3e-031

Arabidopsis top hits (Blast detail)	Score	e value
AT3G18710.1 PUB29 (PLANT U-BOX 29); ubiquitin-protein ligase	703	4e-074
AT5G64660.1 U-box domain-containing protein	526	1e-053
AT5G09800.1 U-box domain-containing protein	505	3e-051
AT1G66160.1 U-box domain-containing protein	262	5e-023
AT5G37490.1 U-box domain-containing protein	240	2e-020

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	1			50%


21	1			50%

Unigene Members	Member information