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Information for unigene UN10170
FASTA Sequence |
Unigene ID: UN10170 | Length: 952 |
SSR | SNP | GTCTAACCTTTTGATTTCATACAATTCAAGAATTTGTTAATTTCGTCTGGAACTTCAGATTAATTTGGAGCTAAAAAATAAAACAA
AACCTCTGGACAAGTTAGAGGGTTCCAAATGTAATGTTATATCATCACCGCAAGATCAGAAGAATGTTTCACTACAGACTAAAATC
TGGTTACACAAATCTCTAATGCCCACCACAAACCCTAACAACATACTCTTCAGTAATAAACATATATCATAAACCTTTCTTTCCAT
GTCACATGGCGGTAGTGTGTTTTGCCTTCAGTCCTCGTGATCATCCAATGTTGAATAGATTAACCAGAAAATGGTGAGGAAGAGAG
TGAGGATCATGTAGGCGAGTTTGAAGAGGCGTTTCTTCTTTTCCCAATCAAGCAAGTTGAAGATCTCTGTCACATCTACCAAATGC
TGTCTTTTCGAGTAAAGTTGGAAGTTGTAGTAGAGATAAGGGACGCCAAGTAGTGACATGAACCAGTGACCAGTGACGAGGTAGAA
GAAACATAGGAAGCCTTGAAGAATGAACTCAGGTAATACCACAAAGTTTATTCTTGATGCAGAGTCGTAAGGGTTGATGTAATCAA
ATTCCAGATCAGCTAAGCAAATAAGCTGGTAGACGATGAATCCGACAAGAGTGATAAGGATTAAGAATGAAATAATCCATGTCCAC
ACATCTCCCATCCCTCTCTCTCTTTCTCTTTCTCTTCCTCTCCTAGCTACGCTACGCACAACAATTACCTCCTCTGGTTTATTCTT
CTTCTTCTTCTATTTAAAGAATCTGGATCTCTACGATCATGCGACGAACAGAGTTACAGAGATGAATTTCTGGTGAAAATTACTTT
AACACTCCTGTCCTGTCTCTCTCCTCTGAGTTTCGTTTCTCTGATCGGAACTCTCTGTGTGGGGAAGAAAGGGAAAGTACTAGACG
TTCTCC
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GenBank top hits (Blast detail) | Score | e value |
XP_002888002 cornichon family protein [Arabidopsis lyrata subsp. lyrata] | 664 | 2e-067 |
NP_176476 protein cornichon-3 [Arabidopsis thaliana] | 663 | 3e-067 |
NP_172701 protein cornichon-4 [Arabidopsis thaliana] | 636 | 4e-064 |
XP_002889932 cornichon family protein [Arabidopsis lyrata subsp. lyrata] | 629 | 3e-063 |
AAF75818 Contains similarity to a 14KDa protein found on ER-derived vesicles from Saccharomyces cerevisiae gi|6321384. ESTs gb|T22150, gb|AI100633, gb|AA395672 come from this gene [Arabidopsis thaliana] | 610 | 4e-061 |
Swiss-Prot top hits (Blast detail) | Score | e value |
P53173 ER-derived vesicles protein ERV14 | 217 | 7e-017 |
P38312 ER-derived vesicles protein ERV15 | 203 | 3e-015 |
O14038 Uncharacterized protein C2C4.05 | 194 | 3e-014 |
Q5RDB5 Protein cornichon homolog | 182 | 8e-013 |
Q5BIN6 Protein cornichon homolog | 177 | 3e-012 |
TrEMBL top hits (Blast detail) | Score | e value |
Q8GWT5 At1g62880 | 663 | 2e-067 |
Q84W04 At1g12390 | 636 | 3e-064 |
Q9LQ18 F16P17.3 protein | 610 | 3e-061 |
Q3EDD7 Putative uncharacterized protein At1g12340.1 | 537 | 8e-053 |
B9GVT8 Predicted protein | 526 | 2e-051 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT1G62880.1 cornichon family protein | 664 | 9e-070 |
AT1G12390.1 cornichon family protein | 637 | 1e-066 |
AT1G12340.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: cornichon family protein (TAIR:AT1G12390.1); Has 463 Blast hits to 463 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 278; Fungi - 110; Plants - 41; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). | 538 | 4e-055 |
AT4G12090.1 cornichon family protein | 470 | 3e-047 |
AT3G12180.1 cornichon family protein | 338 | 6e-032 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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