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Information for unigene UN10170

FASTA Sequence
Unigene ID: UN10170Length: 952 SSRSNP
GTCTAACCTTTTGATTTCATACAATTCAAGAATTTGTTAATTTCGTCTGGAACTTCAGATTAATTTGGAGCTAAAAAATAAAACAA
AACCTCTGGACAAGTTAGAGGGTTCCAAATGTAATGTTATATCATCACCGCAAGATCAGAAGAATGTTTCACTACAGACTAAAATC
TGGTTACACAAATCTCTAATGCCCACCACAAACCCTAACAACATACTCTTCAGTAATAAACATATATCATAAACCTTTCTTTCCAT
GTCACATGGCGGTAGTGTGTTTTGCCTTCAGTCCTCGTGATCATCCAATGTTGAATAGATTAACCAGAAAATGGTGAGGAAGAGAG
TGAGGATCATGTAGGCGAGTTTGAAGAGGCGTTTCTTCTTTTCCCAATCAAGCAAGTTGAAGATCTCTGTCACATCTACCAAATGC
TGTCTTTTCGAGTAAAGTTGGAAGTTGTAGTAGAGATAAGGGACGCCAAGTAGTGACATGAACCAGTGACCAGTGACGAGGTAGAA
GAAACATAGGAAGCCTTGAAGAATGAACTCAGGTAATACCACAAAGTTTATTCTTGATGCAGAGTCGTAAGGGTTGATGTAATCAA
ATTCCAGATCAGCTAAGCAAATAAGCTGGTAGACGATGAATCCGACAAGAGTGATAAGGATTAAGAATGAAATAATCCATGTCCAC
ACATCTCCCATCCCTCTCTCTCTTTCTCTTTCTCTTCCTCTCCTAGCTACGCTACGCACAACAATTACCTCCTCTGGTTTATTCTT
CTTCTTCTTCTATTTAAAGAATCTGGATCTCTACGATCATGCGACGAACAGAGTTACAGAGATGAATTTCTGGTGAAAATTACTTT
AACACTCCTGTCCTGTCTCTCTCCTCTGAGTTTCGTTTCTCTGATCGGAACTCTCTGTGTGGGGAAGAAAGGGAAAGTACTAGACG
TTCTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002888002 cornichon family protein [Arabidopsis lyrata subsp. lyrata]6642e-067
NP_176476 protein cornichon-3 [Arabidopsis thaliana]6633e-067
NP_172701 protein cornichon-4 [Arabidopsis thaliana]6364e-064
XP_002889932 cornichon family protein [Arabidopsis lyrata subsp. lyrata]6293e-063
AAF75818 Contains similarity to a 14KDa protein found on ER-derived vesicles from Saccharomyces cerevisiae gi|6321384. ESTs gb|T22150, gb|AI100633, gb|AA395672 come from this gene [Arabidopsis thaliana]6104e-061

Swiss-Prot top hits (Blast detail)Scoree value
P53173 ER-derived vesicles protein ERV142177e-017
P38312 ER-derived vesicles protein ERV152033e-015
O14038 Uncharacterized protein C2C4.051943e-014
Q5RDB5 Protein cornichon homolog1828e-013
Q5BIN6 Protein cornichon homolog1773e-012

TrEMBL top hits (Blast detail)Scoree value
Q8GWT5 At1g628806632e-067
Q84W04 At1g123906363e-064
Q9LQ18 F16P17.3 protein6103e-061
Q3EDD7 Putative uncharacterized protein At1g12340.15378e-053
B9GVT8 Predicted protein5262e-051

Arabidopsis top hits (Blast detail)Scoree value
AT1G62880.1 cornichon family protein6649e-070
AT1G12390.1 cornichon family protein6371e-066
AT1G12340.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: cornichon family protein (TAIR:AT1G12390.1); Has 463 Blast hits to 463 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 278; Fungi - 110; Plants - 41; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).5384e-055
AT4G12090.1 cornichon family protein4703e-047
AT3G12180.1 cornichon family protein3386e-032

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
84  44%
 
112  22%
 
122  22%
 
101  11%

Unigene MembersMember information