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Information for unigene UN10444

FASTA Sequence
Unigene ID: UN10444Length: 1300  SNP
AAAAAAGGCATTGAAAATTTTAAATGGGTCTGTGAGCAGGCACATATACACATATACGTAAATATTGCAGAAGAAAGTTACATAAG
CTCACACACAAAGCAGCTTTCTCCTCATGGGAATACATAAGACATAACATCAGATTCGGTTGAATGTTATCATCCCAGACAGTACA
AGCAACCGATTTGGTGATATTTTATTTTGTATATCGAAACACACCACGATATGCAAAGTAGTATATAATATAATAGGTGATAAGTT
CCTCTCCAGGCTATTTATTCTTGTGGTCTTGATTCAATCAATTGATACCAATCAGATCATATTCTCAGTTGTGGAGACATAGAAAA
ACTCAACACCGATATATATCGTATCGTTCACCAAAAATCCGTTTGAAGCCTTGTGCAGTTTGTCCAGCGCCAAAAACTTGGGTTCT
CCTTTATGGCCATCAGAGCCAAACCAGAGCTGCTGGTCTAATTCATGGTGATTGCGCTTGAGTTGGTCCAGCACTCGCAGTTTAAA
GACGGCCAACGTATTTGTCTTTGGACTGATCACGTAATCGGAAGCATGCAAATACAAAGACAACGAATTTCCTTTCCCCTCTAAGG
TTCCTTGTGGGCACATCCTTAGGTACCATCTCCGTGGTCCAACCGTGAACTGGTACGATGAATTATTTTCACCTGTGAAGGACGAA
AAACGAGTAATCTTCCAGGTGAATTTAGACTTGTTACTCTCCACCTCCGTCAGTTTAATTCTTTCTGCTGTCCCTATGGTTCGAGG
TATACTGGTAACGTCCAGGAATCTCGGTTTGACTTCTGTGATCTCGGCTGAGAAAACCGATTTGTCGTTCACAGTATATGACTCCT
TCAGGCTATTGAGTGGGATGCTTATCAGTACATGAGTATTGTTTGCCTCGAAACAAACCGGAGTCTGGTGGTTTCCATGAAGGAGT
GAAGAAGTATCAGAGTATAGGGTAAGTTTGACGGTGCAATTGACTTTCCAATTAGAACCGATACACTTGCTGTCCCTGATCATCAG
ACCAAAGTATAGGGAGTCCTCATATGCGGTCATAATGATGTTCCATTTTAGACCACCAACATAGATATCCGATGACACAAAATTCT
CAACTTGTCGAGTCATTAGCTTAGACATTCCATCAACCAAAACTAAGTGAACGTTGCTGTGGCTCTTTGCCTCTGTTCTTACGGTG
TCTTCAAGTGACACAGTTAGACCCATTTCAAGATGGTGGTCGTATAAGACACTGCTCTCGTTTTTTAAGAAAAAAATAAATTTGTT
GATCTATAGT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_180847 TRAF-like family protein [Arabidopsis thaliana]7532e-077
BAC42975 unknown protein [Arabidopsis thaliana]7513e-077
NP_180846 TRAF-like family protein [Arabidopsis thaliana]7272e-074
XP_002881250 hypothetical protein ARALYDRAFT_902353 [Arabidopsis lyrata subsp. lyrata]7244e-074
XP_002881249 hypothetical protein ARALYDRAFT_482229 [Arabidopsis lyrata subsp. lyrata]7235e-074

Swiss-Prot top hits (Blast detail)Scoree value
Q9FPT1 Ubiquitin carboxyl-terminal hydrolase 121344e-007
Q84WU2 Ubiquitin carboxyl-terminal hydrolase 131273e-006

TrEMBL top hits (Blast detail)Scoree value
Q8GX90 Putative uncharacterized protein At2g328807512e-077
Q8GUK0 Putative uncharacterized protein At2g328707191e-073
O48777 Putative uncharacterized protein At2g328806169e-062
O48778 Putative uncharacterized protein At2g328705943e-059
Q84WY0 Putative uncharacterized protein4725e-045

Arabidopsis top hits (Blast detail)Scoree value
AT2G32880.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein7537e-080
AT2G32870.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein7277e-077
AT4G01390.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: stem, cotyledon, hypocotyl, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT4G00780.1); Has 248 Blast hits to 240 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 237; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).2501e-021
AT3G28220.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein1936e-015
AT5G26320.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein1882e-014

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
84  25%
 
94  25%
 
75  31%
 
112  13%
 
151  6%

Unigene MembersMember information