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Information for unigene UN10607
| FASTA Sequence |
| Unigene ID: UN10607 | Length: 1734 |
| SNP | ATACATTCGGATAAAAAATCTACAAGCATTTTGACATACCAATCGCAAACCAGACAAACACACACTAATTTTAAAACTCGCTTGAT
ATTATTATTAAAAGCCAACAAAATACAACAATTTCAATAAGAGAAAATAAAAACATTCAAGAAAAAATTACTCAAGAAAACCCTTT
TTGTTTTTACTGTTTGTTTCTTTATCTCTTCGCCTTGTGAATTCCAATCAGGCGGCCCTACAAAAGCATATTATATAGAGAGATAA
CAGAAGATTACTCTTTGATAGAGAGAGGAAATCTCTAGTGCTGGTACTTCATCTCAGACATGAGAAATCCAGGCATCTCATAGGAG
GCAGCGAACTTCTCAACATCAGCCTTGAGCTCCTCGATCTCTTTGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAACAGCTTACC
ATGCTCCTTCTGGATGTTCAATGTCAGCGTCACTGATCGGCTCAAGAACTCTCCTATCATCTCAAAGTCCTTCTCCACCAATCCCC
TTGATGTCATCGCAGGAGTACCGATTCTTACACCTCCAGGAGCAAGAGCACTGCTGTCTCCAAAGACAGCATTCTTGTTCAAAGTA
ATGTCGCATAGATCGCACAGCTTCTCAACCTTGTTACCGGTCAATCCAAGAGGGCGAAGATCCCAAAGAACAAGATGGTTCTCAGT
TCCACCGGTTACAATACTGTATCCCTTGCCCATCAGGTAGTTTGCAAGGGCAACAGCATTAGCTTTCACCTGTTTCGCATAGACCT
TGAAACCAGGAGTATTAGCCTGCTTCAACGCAACAGCTAGAGCACCAATCTGGTGGTTGTGAGGACCACCTTGAAGCGCAGGGAAC
ACAGCAAAGTTGATTTTGTCCTCAAAGTCATAGACTGCACCCTCGGCTTGCCCCTTCTTTGGTGGTTTCGGGCCCTTCCTGTAGAA
GATCATACCAGCCCTTGGACCCCTCAAACTCTTGTGAGTTGTTGTTGTCACAACGTCACAGTACTCAAAGGGGTTTGCAGCTTCCT
GAGCAGCAACGAGACCACTAATGTGAGCCATGTCACAGAGCAAGAGAGCTCCAACCTTATCGGCAACAGCTCTCAATCTAGCGTAA
TCCCAATCCCTAGGGTAGGCACTACCACCACAGATGAGGAGCTTAGGCCTGAAATCCATGGCCTTCTCCTCAAGCTTATCGTAATC
AATGTAACCAGTGGTGAAGTTCACCTTATACGGAAGGCTCTCAAAGTAGATCGAAGTAGCAGAGATCTTCTTCCCACCGGACGTAT
AGTACCCATGCGTGAGGTGACCGCCCGAGGGGAGATCAAGCCCCATGATACGATCGTGAGGCTGGAGCAAGGCGGTGTAGGCGGCG
AAATTGGCGGGAGATCCGGAGTAGGGCTGGACGTTGACGCCCCATGAGGCGGAGTCGAGGCGGAAGGCTTCGAGAGCGCGGGAACG
GCAGAGATTCTCGATCAGGTCGATGAACTCGTTGCCTCCGTAGTAACGGTTACCGGGCATGCCTTCGGAGTATTTGTTGGTGAGCG
CGCTTCCGAGAGCTTCGATGACGGCGAAGGAGGTGAAGTTCTCGGAGGCGATGAGCTCGATTCCGCGGCATTGGCGGCGTTTCTCC
TTCTCGATGAGGTCGTGGATCTCTGGATCGACGGTTACGAGAGGGGTGTTTCCCCAGGCTGAGACTGGATCCATCTCTGAGAGAGA
TCTGGAAATGAGGA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002868327 hypothetical protein ARALYDRAFT_915517 [Arabidopsis lyrata subsp. lyrata] | 2341 | 2e-261 |
| NP_193129 serine hydroxymethyltransferase 4 [Arabidopsis thaliana] | 2329 | 5e-260 |
| AAM64493 hydroxymethyltransferase [Arabidopsis thaliana] | 2328 | 6e-260 |
| AAG40343 AT4g13930 [Arabidopsis thaliana] | 2319 | 7e-259 |
| ACJ11726 serine hydroxymethyltransferase [Gossypium hirsutum] | 2260 | 5e-252 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q54Z26 Serine hydroxymethyltransferase 1 | 1511 | 1e-166 |
| Q54EW1 Serine hydroxymethyltransferase 2 | 1484 | 2e-163 |
| P34899 Serine hydroxymethyltransferase, mitochondrial | 1420 | 5e-156 |
| Q9SZJ5 Serine hydroxymethyltransferase, mitochondrial | 1409 | 9e-155 |
| P49357 Serine hydroxymethyltransferase 1, mitochondrial | 1395 | 4e-153 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O23254 Serine hydroxymethyltransferase | 2329 | 3e-260 |
| Q8LBY1 Serine hydroxymethyltransferase | 2328 | 4e-260 |
| Q9FPJ3 Serine hydroxymethyltransferase | 2319 | 5e-259 |
| D2D306 Serine hydroxymethyltransferase | 2260 | 3e-252 |
| B9S9Y7 Serine hydroxymethyltransferase | 2251 | 3e-251 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G13930.1 SHM4 (serine hydroxymethyltransferase 4); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 2329 | 2e-262 |
| AT4G13890.1 EDA36 (EMBRYO SAC DEVELOPMENT ARREST 37); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 2033 | 4e-228 |
| AT1G36370.1 SHM7 (serine hydroxymethyltransferase 7); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 1620 | 3e-180 |
| AT1G22020.1 SHM6 (serine hydroxymethyltransferase 6); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 1549 | 5e-172 |
| AT4G32520.1 SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 1413 | 3e-156 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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