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Information for unigene UN12327
FASTA Sequence |
Unigene ID: UN12327 | Length: 1555 |
SSR | | CTAAATCTCTCTTTTTGTTTTGGTTTTGACATTTTAGGTTCATTATTAATTTTATTGTCCATAGTTCTTGTTGATGCAAATGGTTA
GTACCTATTGGTTTGGCTTGGTCTCTGTGTTTATGTAATTAATAAAACAGAGTCTAGTGAATGATTATCATATTTTGTTTAACCTC
AAATGACTTTAACCAATTCTTCATTCTCTCCAGTCTTATGATGTCTCTGAATGGACATTTAACAGCAAGAGCCATTTCGGACTCTA
ATGGATCATCATCTACTACGGCTTGTCCCTAATCCTTCTTCCTGTTCTCATCTTGCTCAGTCACATCATAGATGTTTCAGCAACTT
AACATCAGCCAGTTAAGACAGGAGACAGAGTCTCAGCAGAACCTGAATCAAATGGATAGAGTAGACAGGCTGTTGAGGTGTTGGCT
AGATCAAAGGATTGGAGAGTTTTTTTAGTTGCATATCAACTAATCAAACTATTTTTTTTTGTCAATGTCCAAGTCTATTGAATTAT
GTATATTACACATATGAAAAGATCTAGTTTTACATTTACAGTATTTTATCTTAGAAAGATAGAAGAAACAATTTCAATTCATGGTA
TATTTGTAATGGAAGGAGGCTCAAGAGATCGAGGTTCAGACAGAGATTCTCTGCTTTTTTTATCTCTATATTCGTCCCTACTGTAG
TTCACAGGCCGGGCCTCATTTTAGGCCTAATAAAAAGCATTCCATGAATTCCAATTTTTTTAATCATGAAACTATAGTTAACGGGC
CAGGCCTTTATATGAATACAATCGGGTCTGTAGAAATATCTAAAACCCTAAACATTATCGGCACTCTTAATTCATTTTTTGTGTGT
GTGTGGCGACGAAGGAGCTTGTTAGCCATGTCCGACGTAGTAGCTGATGCTGAGCTCGCGGCGGAGACAAGTGTTAAAGAAGATGC
AAAGGCTGTATTGGAGACGGTTCAATCGACGAAGCAGTTCTCAGTATATGAAGCGAGTTCGGAGGAACTTATAGAACGATCGATGG
CTCCTATTAAAAAAGAGTTCCTATGTCCTCCTCCTCCAAGCCGTAACCTGAAGCAAAGTGACGTTAAGGCGGCGCCTCCTCATCCG
AGCTTAGTCCAGGAGAAGAAATCGAAGAGACAGCTCAAAAGGGAACGCCGTGAGAAATGTGCGATAAACCTGTGTCCACAGGTTTC
GAGAACAGAAGACGTTGATTCCTGTCAGTACAAAGAGAAATGCCGATTTAATCATGACATTGAAGCTTTCAAAGCTCAGAAACCTG
ATGATATAGAGGGGCAATGCCCATTTGTGGCCTCTGGAATGAAGTGCCAATATGGTTTATCATGCCGATTCTTAGGCACTCACACA
CATGTTTCTGATGAGAACCAAATCTCTGAGATTAACGTTTTTAACAAAGGCAAAATCTGAGACTCCTGAACTTGGAGATATTAATG
ATGGGGTGAAATGTGGATGATAACACGGAAAAGAACGGGCATTCTACTTCAAAAGCCAAATTAGAGGATGAGGCTAGCATCAAAGT
TGTCGAA
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GenBank top hits (Blast detail) | Score | e value |
NP_195600 tRNA-dihydrouridine synthase 3-like protein [Arabidopsis thaliana] | 676 | 2e-068 |
XP_002868869 dihydrouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] | 669 | 1e-067 |
XP_002513011 tRNA-dihydrouridine synthase, putative [Ricinus communis] | 410 | 1e-037 |
CBI37975 unnamed protein product [Vitis vinifera] | 370 | 6e-033 |
XP_002275411 PREDICTED: hypothetical protein [Vitis vinifera] | 370 | 6e-033 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q9T0J6 tRNA-dihydrouridine synthase 3-like | 365 | 9e-034 |
Q7XT07 tRNA-dihydrouridine synthase 3-like | 322 | 9e-029 |
Q6BS64 tRNA-dihydrouridine synthase 3 | 153 | 4e-009 |
Q5ALL3 tRNA-dihydrouridine synthase 3 | 152 | 5e-009 |
A3LUK5 tRNA-dihydrouridine synthase 3 | 149 | 1e-008 |
TrEMBL top hits (Blast detail) | Score | e value |
B9RG59 tRNA-dihydrouridine synthase, putative | 410 | 9e-038 |
A2XPT3 Putative uncharacterized protein | 330 | 2e-028 |
B9HRE6 Predicted protein | 330 | 2e-028 |
Q01ML2 H0613H07.1 protein | 330 | 2e-028 |
B7ZX41 Putative uncharacterized protein | 324 | 8e-028 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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