RadishBase

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Information for unigene UN12499

FASTA Sequence

Unigene ID: UN12499	Length: 1093	SSR
GGACATCGATAGATTCCATCTCAAATTCGTTCTTATCATCAAAGTCTCTCTCTCTCATCTACTTAATTTTCTTTCTAGTTCATTCC TTCGAATAATTGAGAGGACAATCATGTGTGCCTTAACACCAATGTTTCCTAGTTACCAACAACAAGAATGGTACTCTGCTTCGCCA ATGGAGTCTCCATGGCTTGATTCCTTCTCTCCTTCTCTTCCATCTTTTCTTTATCCTTCTCTCGACCAACCAGATGAATTCAAGAA CCAAAACATCAATCCTCATCCTCATCCTCATCCTCATCCTCATCACGTGAATCTTGCTCACATAAATGGTAGTAACAATAACAGTA ACAATGATCAAAAAGAAGATGAAAGAGAATTGGTTTTGGAGAAGAAACTGAATCACAACGCTAGCGAACGCGACCGCCGTAGAAAG CTAAACGCCTTATACTCTTCACTTCGTGCTCTCTTGCCTCTTTCTGATCAAAAGAGGAAGTTGAGCATTCCAATGACTGTAGCGGG AGTGGTGAAGTATATACCAGAGCAGAAGCAAGAACTTGAACGTTTGTCTAGGAGGAAAGAAGAGCTTATGAAGACAATCTCCAGTA AGACAGCGACTTTGAGTCATCAACAAGAACAGCTGAGACATAGAGCAATGATGGACTCTATAGATTATTCTCCTCAAAAGATTGCA GCAAATTGGACCACAGACACAGAGATAGCTGTCCAGATTGCTACATGGAAATGGGCATCTATCTCATACATGTTGCTTAGGTTAGA AGAAAACGGGCTTAATGTCACAAGCGTCTCTTTTTCTGTTTCTTCCACCGCAAGGATCTTCTACACGATGCATCTTCAGATGAGAG GAGATTGCAGAGTGAGGTTGGAGGAACTCAGCGATATGCTATTCGGATTACGCCAATCATACTGAGGGATGAGAGTTTCAAGAAGT GAATCTCTAATGTTATAGACTTTTATCAGATTTTAGAACTGTACTCTTTTTTTTGGAACAACTTAGAACTGTACTCTTTTGTAACG TTTTCTTGTTATACTTTTTTTCTTATTGTTAAATTAATGATATTATTTATCTTTTTTTTTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAJ34136 unnamed protein product [Thellungiella halophila]	966	3e-102
XP_002873137 predicted protein [Arabidopsis lyrata subsp. lyrata]	794	2e-082
NP_196035 transcription factor bHLH101 [Arabidopsis thaliana]	782	6e-081
ABK28679 unknown [Arabidopsis thaliana]	782	6e-081
CAN64266 hypothetical protein VITISV_031510 [Vitis vinifera]	380	2e-034

Swiss-Prot top hits (Blast detail)	Score	e value
Q9FYE6 Transcription factor bHLH101	782	3e-082
Q9M1K1 Transcription factor ORG2	335	2e-030
Q9M1K0 Transcription factor ORG3	310	1e-027
Q9ZVB5 Transcription factor bHLH100	297	4e-026
Q9FLI0 Transcription factor bHLH120	149	6e-009

TrEMBL top hits (Blast detail)	Score	e value
A5C6G0 Putative uncharacterized protein	380	2e-034
B9IHR7 Predicted protein	359	5e-032
B9SZX2 DNA binding protein, putative	348	9e-031
A5C2W4 Putative uncharacterized protein	337	2e-029
B9H8T9 Predicted protein	330	1e-028

Arabidopsis top hits (Blast detail)	Score	e value
AT5G04150.1 BHLH101; DNA binding / transcription factor	782	2e-083
AT3G56970.1 BHLH038; DNA binding / transcription factor	335	2e-031
AT3G56980.1 BHLH039; DNA binding / transcription factor	310	1e-028
AT2G41240.1 BHLH100 (BASIC HELIX-LOOP-HELIX PROTEIN 100); DNA binding / transcription factor	297	4e-027
AT2G41240.2 BHLH100 (BASIC HELIX-LOOP-HELIX PROTEIN 100); DNA binding / transcription factor	278	6e-025

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	1			33%


8	2			67%

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