 |
Information for unigene UN13077
| FASTA Sequence |
| Unigene ID: UN13077 | Length: 1352 |
| SNP | GCGATAAATATTTAACTCTTTAATGATCAAGTCTAAGTGTAAACAAAGTTGAGAAAGAAGCAAATTAACCATATTATAATTCTTCA
TGGGTTGAATTATTTAATGTCTATAACATTTTCACGGCGAACAAGTTCCGGTCACCGGAAACAACAACAACAAACCACAACACAGT
AACACAGAATATCTTACAGACACAAACTTCTCCATCTCTTATCTTAAACCGATGCAACAGAAATCTCATCTGAACCGGTTGTAACC
TTGAACACATTCTTGGTTGAAGGCAAACCACCCACTGGTTCATCTTCAATTCCACATTCATTTGTTCCTCTCCTAATCATGAAATA
ACCATCATCACCCCAGCTTCTGTTCCATTGATTTGCCAACAACCAATAATCTTCTCCATCATCAGTAGTTCCCCAACCAATAAGTT
TCACAGCATGACCTCCAATGTTAGAGCCTGTTATGTGCTTGTACACTCCAGATTTGTAATGAGCAAAGTCCTCATAAACTGTGAAA
GAGACTTCGACAGGTCCATTCTTGTAAATCTCAGCCATGATATCTTGAGGATTAGACTCGACAACGTATGTATTAATACTGTAATG
TTTTGACTCGCTCCATAATTGGTTTCTGCCAACGCATTTCCTCAGGCATTGCGGTGTATTGTATGCAGGTTCACAGCCAGGGTGTG
AGCATCCGGTTTGATCAAAGTATGGATCACACTCTTCAGTGACAACACCACTGTAGGAAAAGTATTGCCAAGCAGAAATTGGGTAG
CCACCGTCACAACCGTCACCACAACGGAATCCACAGCATGCTAAGAGATCATTTACTGATAAAGTAATGTTCATTCCAAATTGGAT
ACAGAATCTATCAGATAGTGATTCAACAGCACCAAATGCCCAGCAAGAACCACAATGTCCCTGATCTAAGATTTTTCCAATACTGG
TGCATTGAGGCCAATGTGTTCTAGCATCGAATGATTTAGGTAACTTCAGAGATTGATCATGGCTTACAACAGGAACACCTAAGAGT
AACTTCTTAGGTGTTGGTTTAACACCAAGGAGACGCTTAAACTCTGCTACAGTTGCGTTAGAGAAACGATCATTAATAGCAGCTTT
CCATCCAGCGTTCGGATGTTCGTTGACCTTCTTCACTATCTCTTCCTGAAGTATCTTCGAGCTCAGTTTCTGTTTGGTAAGATTCT
CTGCTGCAACTCCCTGCAAGTCGAGAGACGAGGAGACAAGGCCTAAGAGCAAGACAACAGAGACCAAACAGAGTTTGGTTGTAGAA
TCAGCAGCCATGGTTTTGGAATCCCAGAAGATTAAAAGATCTCGTTGTAGAAGCAACCCTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAG69285 cathepsin B-like cysteine protease [Raphanus sativus] | 1834 | 8e-203 |
| BAJ34434 unnamed protein product [Thellungiella halophila] | 1779 | 2e-196 |
| XP_002874969 hypothetical protein ARALYDRAFT_490415 [Arabidopsis lyrata subsp. lyrata] | 1722 | 8e-190 |
| NP_567215 cathepsin B [Arabidopsis thaliana] | 1710 | 2e-188 |
| NP_849281 cathepsin B [Arabidopsis thaliana] | 1696 | 8e-187 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q5R6D1 Cathepsin B | 748 | 3e-078 |
| P07858 Cathepsin B | 746 | 5e-078 |
| P10605 Cathepsin B | 718 | 9e-075 |
| P25792 Cathepsin B-like cysteine proteinase | 690 | 2e-071 |
| P43157 Cathepsin B-like cysteine proteinase | 689 | 2e-071 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B5BQV5 Cathepsin B-like cysteine protease (Fragment) | 1834 | 6e-203 |
| Q94K85 Cathepsin B-like cysteine protease | 1710 | 1e-188 |
| Q9ZSI0 Cathepsin B-like cysteine protease | 1696 | 6e-187 |
| Q93VC9 At1g02300/T6A9_10 | 1532 | 6e-168 |
| B9GRU7 Predicted protein | 1401 | 9e-153 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G01610.1 cathepsin B-like cysteine protease, putative | 1711 | 6e-191 |
| AT4G01610.2 cathepsin B-like cysteine protease, putative | 1697 | 2e-189 |
| AT1G02305.1 cathepsin B-like cysteine protease, putative | 1532 | 3e-170 |
| AT1G02300.1 cathepsin B-like cysteine protease, putative | 1063 | 8e-116 |
| AT3G45310.1 cysteine proteinase, putative | 186 | 4e-014 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
