RadishBase

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Information for unigene UN13094

FASTA Sequence

Unigene ID: UN13094	Length: 1165	SSR	SNP
GACCTCAAACTCTCTCTCTCTCTCTCTAAAAGTCGTTTCCCTAGAAAAAAATGTCATCCAAGGACAAGAAACCGGTGAGGCCATCA AGTAGCCGAGCCGGTGGAATCCGCACTCTGTCCGATCTCAATCGAAGGTCTGGTCCTGACTCCGACAGTGATTCCGACAGTCCACA GGAATACTACACCGGCGGTGAGAAAAGTGGTATGCTTGTTCAAGATCCTTCGAAGAAAGATGATGTTGATGAGATATTCAATCAAG CTAGACAACTAGGAGCCGTGGAAGGACCTCTCGAGACTCCTTCTTCGAGTTCCACGAGCTTCACCGGAACTGGGAGATTGCTTTCA GGAGAGAGCGTTTCAGCTGGTACTCAACAGCCTGAGCCTGTGGTTCACACCATTGTTTTTTGGGCTAATGGATTCACCATTGATGA TGGTCCTTTGAGGAAGTTGGATGATCCAGAGAACGCTTCTTTTCTCGAGAGCATTCGAAAGTCTGAGTGCCCGAAAGAGCTTGAGC CTGCAGATAGAAGAGCCCCTGTTCATGTCAATCTGATGCGAAGGGAAGAGAAATGTCCAGAACGAGAGAAGCGTAAGGTTTCATTT CAGGGTGTTGGGAGGACTCTAGGTGGTAGCAGCAACGACAGCAGCGGAAGTGGCTCATCAATAGCTCCAGATGCCGCCGCCGCCAT TCCCATCCAAACCAACCAAACCGGTTTAGCAGCACCATCACCAACTCCAAGTCTTGTAATAGATGAAACCCTTCCGACCACGTCGA TCCAGATTAGACTAACGGATGGGACCAGGCTTGTGGGCAAGTTCAATCTTCATCACACTGTCAACGACATTCGAGGTTTCATCGAC TCTTCTCGACCTGGAGCTCCAGTTAACTACCAGCTTCAGACAATGGGGTTCCCACCTGCGCCTTTGACTGATTCCACTCAGACCAT TGAACAAGCTGGTCTCGCCAACTCTGTTGTTCTTCAGAAGTTCTAGAAGGTTTCTTGTCTTTCTATATGGATTATGATCAGAGCTT CATAACTGTTATTGTAATCATAAAAAAAAAGATGGTTGGCATGTCTGTAAGTTACTTATACGCAGCATAAATGATCTCTCATGTGG GAAGAAAAGACTTGTGTTATAGTTTTTCTTAATTATCGAAAATAATT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002872684 plant UBX domain-containing protein 4 [Arabidopsis lyrata subsp. lyrata]	1379	4e-150
NP_567262 UBX domain containing protein 4 [Arabidopsis thaliana]	1327	4e-144
AAC28225 contains similarity to rat p47 protein (GB:AB002086) [Arabidopsis thaliana]	1296	2e-140
XP_002317152 predicted protein [Populus trichocarpa]	1148	2e-123
ACU19568 unknown [Glycine max]	988	8e-105

Swiss-Prot top hits (Blast detail)	Score	e value
Q7Y175 UBA and UBX domain-containing protein At4g15410	901	4e-096
Q54BQ5 NSFL1 cofactor p47 homolog	432	1e-041
Q5ZLK2 UBX domain-containing protein 2B	334	2e-030
Q9UT81 UBX domain-containing protein 3	243	9e-020
Q9UNZ2 NSFL1 cofactor p47	192	7e-014

TrEMBL top hits (Blast detail)	Score	e value
Q8RWU7 CDC48-interacting UBX-domain protein	1331	1e-144
O81456 Putative membrane trafficking factor	1315	7e-143
B9HZB4 Predicted protein	1148	2e-123
C6TCL6 Putative uncharacterized protein	1038	9e-111
B9HZ53 Predicted protein	908	1e-095

Arabidopsis top hits (Blast detail)	Score	e value
AT4G04210.1 PUX4; protein binding	1337	1e-147
AT4G15410.1 PUX5 (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma); protein binding	902	3e-097
AT4G22150.1 PUX3; protein binding	884	4e-095
AT3G21660.1 UBX domain-containing protein	275	2e-024

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	3			17%


8	3			17%


21	5			28%


19	4			22%


20	1			6%


7	1			6%


11	1			6%

Unigene Members	Member information