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Information for unigene UN13508
FASTA Sequence |
Unigene ID: UN13508 | Length: 1115 |
SSR | | GCTGAAACAAATGACAATTCATAACAGAGAACTTCAACATACTCCCAAGATAGTTAATACATCTGCAGAAATCAGCTTCAAAGATC
CATGTCATAACAGATTTTGATATTTTAGTACACTCTTGGGATAAACAGTGATAAAGAGTACTGTGTTCAAACGGTTTGTAGTTTGA
TTTCTAGCATATCCTAGTTTCACTTTCACATGTAACCTCCAAAAGGTGGTGGTGGAGGTGGTGGGTAGGCCCCACTACCATTAGTC
ATCATCGGGGGTGGTGGTGGTGGCAGTGAACCAGATGGAGGTGGTGGTGGCGGTTGAGCTTGAGGCGGTGGTGGTGGTGGTGGCAG
AAGGCCATTTGAATCAACTGTGGACTGAGGCTTGAATGGTTCTGGTTTGTTCGGCTTGAAATACACCTGCAAAGTAAACATCTTTG
AGTCTGGATCCCAGTGAGAGAAAAACTTTGGGGTTGACTTGTCTATCTCTGTGCTTGGAACCTTGAAGGCTATGGTTTCATATGGT
TCAGCTGCAAACAGCAGGTATTGATACTTCTTGTCGTAAGGTTGAACTTTCTGCTCGAATGAAGACATGACACGATGTTTAGGCTT
TATGTTGTCCTCTATTTCAGGATACTCAATCTGGAACAGAAGAGATCTTTGCTTCAGCTCAGGGTCGTACTGCTTTGTGACGCGGT
ACCCTGGTCTACCGATTTTCACTGTTCTGCGGACAGAGACAGTGCGCTTGTGGGGCTGTGGCTGAGTAGGAGCTTCTGATGCCTCA
CGAGCAGCTCTCTTAGCCAAGTTGGTCTGATGCCTCTTACCTTGGGTATGCGCCAAGTAGTTTCCTTCGTTGTTATGCAGCGTTAG
ACACAGTTTGCACTCATAGCTTCCGAGATGATTTCGCATGAAATAGGGATCTTTGGCAATGTCTATGGTTTCGAGAGCAAGACGAC
GGAGACGCTCACGGCGATCTATGGCCTCGTTTTGGCTCGAGGCGGCGCCTCCGCCTCCTGGCTTCGATCCCCATTCTCTGTCCATA
GCTTACTGGTCAATCCTCTCTATCGCTCGCTCTTCGATTTTGAGCCCTGAAGAAGAATACTCTGAAAATTTGGGATGGGTCCC
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GenBank top hits (Blast detail) | Score | e value |
XP_002881233 hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata] | 1296 | 2e-140 |
NP_565747 splicing factor 3A subunit 2 [Arabidopsis thaliana] | 1294 | 3e-140 |
XP_002323495 predicted protein [Populus trichocarpa] | 1185 | 1e-127 |
XP_002519451 Splicing factor 3A subunit, putative [Ricinus communis] | 1168 | 1e-125 |
XP_002266748 PREDICTED: hypothetical protein [Vitis vinifera] | 1154 | 4e-124 |
Swiss-Prot top hits (Blast detail) | Score | e value |
A5PJN8 Splicing factor 3A subunit 2 | 886 | 2e-094 |
Q15428 Splicing factor 3A subunit 2 | 885 | 3e-094 |
Q6AXT8 Splicing factor 3A subunit 2 | 882 | 7e-094 |
Q62203 Splicing factor 3A subunit 2 | 810 | 1e-085 |
Q54B65 Splicing factor 3A subunit 2 | 663 | 2e-068 |
TrEMBL top hits (Blast detail) | Score | e value |
O80897 At2g32600/T26B15.16 | 1294 | 2e-140 |
B9IFT9 Predicted protein | 1185 | 8e-128 |
B9S0D2 Splicing factor 3A subunit, putative | 1168 | 7e-126 |
A9NV96 Putative uncharacterized protein | 1107 | 9e-119 |
A9NVY1 Putative uncharacterized protein | 1098 | 1e-117 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT2G32600.1 hydroxyproline-rich glycoprotein family protein | 1294 | 1e-142 |
AT1G61080.1 proline-rich family protein | 170 | 2e-012 |
AT3G22800.1 leucine-rich repeat family protein / extensin family protein | 158 | 5e-011 |
AT4G13340.1 leucine-rich repeat family protein / extensin family protein | 158 | 5e-011 |
AT1G59910.1 formin homology 2 domain-containing protein / FH2 domain-containing protein | 149 | 6e-010 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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