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Information for unigene UN13524

FASTA Sequence
Unigene ID: UN13524Length: 1371 SSR 
GAGACTCAGTGACCATTTCTATAATAATCTACCAATCTCTCTGACGCGCTTTCTTCTCCGGTGTCTCATCTTCACGTCCGGCGCAT
TTCGTGGAAGCAGAAGAGGCTAAAAAGCTATGGACAGCTTCTGGCAATTGGGTGATGAGCTACGAGGCCAGACTCAGTCACGAGCA
TCAGAGGATCACAAATGGTCCACCGTCGCAACCAAGCTCGCTGAGCAGACGAGGATGAAAAGCGAAAGGTTGAACAACCTCGATCT
CTCCAAAGCTGGCTACTCTGAGTTCAGACCATCCGACAAGCTTGGTTTCCACGACAACAACAACAACAACCTTAGCTTCAACATGT
TTAACAACAGCAATGTTTACAACAACATGAATGCTGCTGTTTTCCAGAAGAATGATTTCTTCAAAAGTGGAGGAGGCAACACGAAG
GTTAACAAGTATAGTGGCAATGTTGTTGCTAACAAAGAGCTGAGCAAACACAACAACAGCAATGATAGTGCTGTTGACAAGAGGTT
TAAGACTCTGCCTGCGTCGGAGACGCTTCCAAGGAACGAAGTTCTTGGCGGGTACATCTTTGTTTGCAACAACGATACCATGGAGG
AGGACTTGAAGCGTCACCTGTTTGGGTTACCTCCAAGATACAGAGACTCTGTGAGGGCAATAACACCTGGATTGCCTCTGTTTCTT
TACAATTACACCACTCACCAGCTCCATGGTATCTTTGAGGCAACAACTTTTGGAGGTACTAATATAGATGCGACTGCTTGGGAAGA
CAAAAAGTGCAAAGGAGAGTCAAGATTTCCCGCGCAGGTAAGGATCAGAGTGAGGAAGATCTGCAAAGCCTTGGAAGAGGATTCCT
TCAGGCCTGTTCTTCACCACTACGATGGTCCAAAATTCCGCCTTGAGCTCTCTGTTCCCGAGACATTGGATCTGCTAGATCTCTGC
GAACAAGCTGGTTCTCCATAAAGCCGATCAACCTTGCATTACCACGTTGCTAAGTGGCGGAGTGGCGTTCTGTCTGAAATCTATAT
CTATATATATATGCATAGTACCGTAAGAGCGTAAGCTTGTGGGATTTAGTTAAGAGTCATGTATGGTTTACTAAGTGAGGAGTGTG
TGCGTCTTAGCAAAAGGGTGAAGAGGCTCCGGGGAATAAGCGCACGACTCTCAGTTCTTGTTGTGTCTCTAATGTGAGTTTGTCTC
TGTGTGTTGTGAGAGATTTGATAACTCCTTTGAAACATAAGATTTTATGTAGAAGAATATATATAGAGAGAAAGTGAGAGTAAACA
ACAGAGCCAGAAACAATGGAATGAGCTTCTGTTTGTGTTTGCTTGTGTAAGGAAAGTTTAAACAAATGTTGTTGTGTTTCG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002875357 hypothetical protein ARALYDRAFT_484493 [Arabidopsis lyrata subsp. lyrata]12362e-133
NP_189345 DCD (Development and Cell Death) domain protein [Arabidopsis thaliana]9817e-104
AAM64572 gda-1, putative [Arabidopsis thaliana]9809e-104
XP_002871604 predicted protein [Arabidopsis lyrata subsp. lyrata]9763e-103
XP_002328947 predicted protein [Populus trichocarpa]8581e-089

Swiss-Prot top hits (Blast detail)Scoree value
P37707 B2 protein7044e-073

TrEMBL top hits (Blast detail)Scoree value
Q9LSC7 AT3g27090/MOJ10_189815e-104
Q8LBT1 Gda-1, putative9806e-104
B9N102 Predicted protein8589e-090
Q8L6E9 GDA2 protein8571e-089
O23769 Putative uncharacterized protein8561e-089

Arabidopsis top hits (Blast detail)Scoree value
AT3G27090.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42050.1); Has 642 Blast hits to 564 proteins in 35 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).12214e-134
AT5G42050.1 FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27090.1); Has 5084 Blast hits to 2870 proteins in 85 species: Archae - 0; Bacteria - 24; Metazoa - 270; Fungi - 58; Plants - 157; Viruses - 8; Other Eukaryotes - 4567 (source: NCBI BLink).6954e-073
AT3G11000.1 LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01660.1); Has 173 Blast hits to 164 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 4; Plants - 153; Viruses - 1; Other Eukaryotes - 7 (source: NCBI BLink).2402e-020
AT3G11000.2 EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01660.1).2402e-020
AT5G61910.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32910.1); Has 4051 Blast hits to 2453 proteins in 312 species: Archae - 1; Bacteria - 477; Metazoa - 1792; Fungi - 482; Plants - 477; Viruses - 8; Other Eukaryotes - 814 (source: NCBI BLink).2341e-019

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
64  50%
 
211  13%
 
123  38%

Unigene MembersMember information