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Information for unigene UN13640
| FASTA Sequence |
| Unigene ID: UN13640 | Length: 1454 |
SSR | | GCTGAAACACTTAAGTTTTTATTTATGAAAAATAGATTGCCCCAATAGAGTGCTACAACAAAGCAACTATAAGTTTTTTTTCTTCT
TCTTCTTAAATATAATAAAACCAATAGAAGTCACTGAGAGAACCAAATCTTGATGCTTCCATTACAAATAAAAATGAAGCTATAGA
TGGCATATATAGTAAGTTCCATCGAATTTACTTGAGGATTTGGCTACCATAATCATCGTTGAACTTGTCATACAGATGTGCATGCA
GATGAGCCGATGGTCGAGTGTTGCTGAAAGCTCGGTCAACGTCTTCTGGTAGGATAGGTCCCACTTTTGGCAACTCATCTTCAGGT
ACAATCTCTTCTGTGTCTTCCAATGCAGCCAATGTACGTCTCAATGGTTGCATTGCAGCTTCCTTGCAAAGTATCCTAATGTCTGA
ACCAGAATAGCCCTCCGATTTCTCAACCAGCACATCATGAGGCAATGGCTCATCACCTGGTTGTGACGGCAGGAGCATCTCAAACA
TTCCTCTTCTTGCTTCCGGATCCGGTAATGGTACAAGAATTCTCTTCTCTAGACGCCTGAGCATAGCTGCATCAAGCTCCCAGGGG
AGATTTGTTGCTGCTAAAACAAACACGAGCTCATTCGTTTTCTGTAACCCATCCATCTGAATAAGCAGCTCGGTTTTGAGACGCCT
ACTTGCTTCATGTTCACTGCGTCCTTCACCGCCACGCTGACTTATGATCGCGTCTATTTCATCAAGAAATATAGTAGAAGGAGCGT
GATGCTTAGCTAGATCGAACAGCACTCTTATCAACTTCTCAGAATCACCTCTCCATTTGCTCACAACAGATGAGGCTGAGATATTG
AAGAACGTTGTGTTGCACTCTGTAGCGACAGCCTTTGCAAGCATAGTCTTTCCGGTACCAGGTGGACCAAAAAGAAGAATCCCTTT
CCATGGAGATAGCAGACCATTAAAGTACGAGGGGTATTTGATAGGCATCACCACAGCTTCTTTGAGCAACCTTTTAGCGTTCTCTA
AACCCTTGATGCTTTCCCACTTCACATTTGGGTTCCCACGGATGATATCCCTGCTTAGACTCTCAGCGAGAGCACGAGTTTCTGCA
GATTCAAAAGGTGGGAACATTGACTTCTTCGGCTTCTCACGGATCCCATTGGCCAAGCCAGTGTTACCCTCCTGAGCTGGATTGGT
GACGACTTGGGAAGGGTCTTCTTCCTTGGTACTGGATGATCCATCTTCTGGCTTTGATTCCTGGGGCTCTTCAGGCAGCTTCTTCC
TCCCAAACAGGAAGCTCCAGCGAGTGAGAGAAGGCTCATCGGTGGCCATTGTTGATGGATCTCGAAGCTCAAGAAGAGGAGGAGGA
GAAGCAAAGAGAGATTAGAAGAGAAGAAGACAAGCAAAGGGAGATGTCTCTCTCTCTCTATATCTCTCTTTCTTCTGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_565791 P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] | 1767 | 5e-195 |
| XP_002879503 hypothetical protein ARALYDRAFT_482419 [Arabidopsis lyrata subsp. lyrata] | 1716 | 4e-189 |
| NP_973600 P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] | 1698 | 5e-187 |
| XP_003387728 PREDICTED: katanin p60 ATPase-containing subunit A-like 2-like [Amphimedon queenslandica] | 927 | 1e-097 |
| XP_003214549 PREDICTED: katanin p60 ATPase-containing subunit A-like 2-like [Anolis carolinensis] | 891 | 2e-093 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| A0JMA9 Katanin p60 ATPase-containing subunit A-like 2 | 889 | 1e-094 |
| Q8IYT4 Katanin p60 ATPase-containing subunit A-like 2 | 873 | 1e-092 |
| Q9D3R6 Katanin p60 ATPase-containing subunit A-like 2 | 866 | 7e-092 |
| O61577 Katanin p60 ATPase-containing subunit | 734 | 1e-076 |
| Q9SEX2 Katanin p60 ATPase-containing subunit | 731 | 3e-076 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O64691 AT2G34560 protein | 1767 | 4e-195 |
| Q3EBN1 AT2G34560 protein | 1698 | 4e-187 |
| B9H2B4 Predicted protein | 1449 | 3e-158 |
| B9S114 Katanin p60 ATPase-containing subunit, putative | 1410 | 9e-154 |
| B9NBM3 Predicted protein (Fragment) | 1358 | 1e-147 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G34560.1 katanin, putative | 1768 | 2e-197 |
| AT2G34560.2 katanin, putative | 1699 | 2e-189 |
| AT1G80350.1 ERH3 (ECTOPIC ROOT HAIR 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding | 731 | 3e-077 |
| AT2G27600.1 SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding | 661 | 4e-069 |
| AT3G27120.1 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding | 619 | 3e-064 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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