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Information for unigene UN14101
| FASTA Sequence |
| Unigene ID: UN14101 | Length: 1610 |
| SNP | GCTTCAAAATTTTAATAATTTTATTATATATATTAAAGCACTCTTGCATATTGAGAATCATACAAAATTTACTACTCAGTAATGTG
TCACTCTCTCTGGAGATATCCACATCATTTATATGTCAAAAAAGTATAATAAATACAAGAGTGATATATCAAAACTTTTCCATCGC
AGTCTAATTAATCAAAGTGTCTTAATTAGATGGATGCTTGGTGGACAAGCGACTATAAAATTCAAGGACCCGATTTAGCGATCTCA
GTGCAAGCAGGTGGAATCATCTGTCCGGTGAGAACAGGCTTCATGTTAGCACAGGCCCCTACAGCTGGTCCTTCTGCACCTTTGTG
GACCAAGTTGATGTCAGCAAGAGCAACATTAGTGCAAGGCGTGCCTGAGCTGCAGATTAATTTCACAGCAATCTTTGTCGCTGATG
TGCCCTTAATGTTCTTGAAGGTCACGTCCGACAATTTCACCTTAGAAGGTACCCCAACTTTGCAGTCGGCATAAGGACAGTACTCT
TGGTCGATGAGAACGGGAGTGCTAACATTGTCCATTGTGATATCCTCAAAAATAATGTTGGAGGCAATACCAGGAGGAGATCCAGG
CCATGTCTTGATGCGAACACCATTCATGGTGTTCTTGATGAGGCATTTCCTCACTGTGACTCCTTTGACTGGTTGCTCATTAGGGT
ACCTTCCTAGACTCCCTACGGCAATGCCGTGTCCCGGTCCACATTCCACATTCTCAACAATGAGATTCTCAGTACCATCTCCTATG
GAAACACAGTCATCTCCTGTTTTAATCTTTGCCCCTAGTAAGTTCACGCCGATGGACCTTCCAATGTGGATACCATCAGTGTTGAG
ACTCTCCGGTGGTGCATCAATACCAATTTTCTCAAGAGTTACGTTCTTGCAGTTGAGAACGTTCATGTGGAAAAGTTTGCTGTTCG
TTGATGTTATGCCAATAATTTTGGAGTTTGTGAGACCCGTGAATCGTATGTTGATGGGGAGAGAGTTGCATTTTCCAGTTTTTGCG
CAGTCATTGGCCTTCCAAGCGAGGGAGCCTTGACCGTCAAAAATGGCTCCGTTTCCATTCAAAGTGAAATCAGCAAGATTTGTAAA
ATCAATCCATCCGCTGTTAGGCTTAGTGGCACCGACCGTAGCCGGAGCCTTCATATTGCCGTGCATTTCCAAAGTGACAGGACCCT
TGCACGGACCTAAGAACTCTATGTTGTTCACCAAATAATCACCCTTTGGCATTGTAATCGTGCTCGGTCCTGCTGCTTCACACGCT
GTTTTCCATACAGCCAAAAATGCCGCAGTGTCATCGGTTGTTCCGTCTCCTTTGGCTCCTGCTGCTTTAACGTCAAGTGCTCCACC
ACTTCCTGCGGGTCCTGTTGGTGCAGCTGCGCCGCTTCCTTTGGGTCCTGGATCAAGGGGTGCCCCGTTTGCTATTGTGTTCAAAA
TAGCCACTACTAGTACAAGAAGTACCGTCTTTGCTCTGCGCAAACCCACCATTTTTATTCTCTTTTATTTTGTCTTATTTAATACT
AGATCTTTATTTATTTTTTTTGTTTTTTTTGTTTTTTTTTTGTTTTTTTTGTTTTTGTTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ADJ68232 exo-polygalacturonase [Brassica rapa subsp. campestris] | 1955 | 1e-216 |
| XP_002885005 polygalacturonase [Arabidopsis lyrata subsp. lyrata] | 1757 | 9e-194 |
| XP_002862616 polygalacturonase [Arabidopsis lyrata subsp. lyrata] | 1756 | 1e-193 |
| XP_002884670 exopolygalacturonase [Arabidopsis lyrata subsp. lyrata] | 1751 | 4e-193 |
| NP_188020 exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] | 1747 | 1e-192 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P49063 Exopolygalacturonase clone GBGA483 | 1717 | 2e-190 |
| Q39786 Polygalacturonase | 1069 | 2e-115 |
| Q39766 Polygalacturonase | 1064 | 9e-115 |
| P24548 Exopolygalacturonase (Fragment) | 1011 | 1e-108 |
| Q6H9K0 Exopolygalacturonase (Fragment) | 1004 | 8e-108 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LVJ4 Polygalacturonase; pectinase | 1747 | 9e-193 |
| O65401 Polygalacturonase | 1744 | 2e-192 |
| Q39094 Exopolygalacturonase | 1738 | 1e-191 |
| Q8W4P2 Polygalacturonase; pectinase | 1733 | 4e-191 |
| B9DHZ7 AT3G14040 protein (Fragment) | 1376 | 9e-150 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G14040.1 exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase | 1748 | 4e-195 |
| AT3G07850.1 exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase | 1718 | 1e-191 |
| AT5G48140.1 polygalacturonase, putative / pectinase, putative | 963 | 4e-104 |
| AT3G07840.1 polygalacturonase, putative / pectinase, putative | 956 | 2e-103 |
| AT3G07820.1 polygalacturonase 3 (PGA3) / pectinase | 944 | 6e-102 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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