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Information for unigene UN14770

FASTA Sequence
Unigene ID: UN14770Length: 1762 SSR 
GAAACCAAAATTATGTTTTTCTTTAATAAGACAAAAACAAAACTACACCAAAGTTTGAAATCTCTGTAATCTGATAAATGAAATTA
CAACAGCAAATCTTAGACAACAAAAAGCCAAAAGCCCCCTTAAACGTTTTCTAAATAACTTCTGTCTGTCTTCATTCTTTTCACTC
ATCAAGCAGGCCAGCTTCCTTGAGGGCACTCTTGTACTCTTCCTCTGAGTTCCAAGACTTAATCTCCTTAACTTGCGCTCCAAAGT
AGCGCTCTATCTTCTCCATCACCTCTTTATCATCCCCATTCTCAAGAAGGAGGTTGAACACAGCCCCTTTACGACCAAACCGACCA
GCTCTTCCAACTCTGTGAAGGTAAACCTCATAATCTGGCTCCCCGGTTTCATATTTAGTAGGCATGTTATAGTTGACAACCAAATT
CACCCGTTGCTGGTCAAAACCTCTTGCAAGGACATCAGTTGCAATGAGGACTTGAGTAAGGCAGTCTTTGAACTCCTTCACTATCT
TATCTCTCTCCTCTTGAGTCATGCTACCATGAACACTTGTGACGTCATACCCCATTTCCGCAAGAGCTTTGTGCACTTTGCTTGCT
GACACCTTCGTTTTCACAAATATTATGGTCTGGCCAATATCCCCCAGCTCCATGATCTGATCCTTGATCACTTCAATCTTGTCTTG
CTCCTTTGGGCAAACCACTTTGTACTGTTTTACTGAGTCTAAAGCTAGATCCTCTCTTTTTACAAAGAGTTGGTTGGGGCTCTTCT
TCAATGTCCTCTGAACAAAATCTTTGACATTGTCGTTAAAAGTTGCCGAGAAGAGAAGAACCTGGTAATTGGGATTAACTCTCTCA
ATGTCTTTCATTATCCTCAAGGAATCATCCCTAAAGCCATCCGTAGCAAGCATATGGTCAGCCTCATCGAAAACCAAAATCTTCAA
ATGATTTAGACCAAGTTTCTTAAACGCCATCCACTTTTTAAGTGTCCCAGGTGTGCCAATCACAACTTGGGCAGAAACAGGTGCTC
TTCTTGCAAAGTTTCCGCCTTGATTCGACTCAGGGACAGCAACTTCAGCAGTGATCCCAGTAAACTTCCCCATCTTCTGAAGAACT
TCCATGTTCTGGTTTGCTAATTCTCTGGTGGGACAAATACAAAGAGCTTGAGGCTGTCTCAGACTTGGGTCAACACGACTGAGCAT
CCCAAGAACGAAACAGGTAGTCTTGCCAGATCCATTATGGGCCTGAGCAATGAGATGCTTATGAGGCGGTGTGATGATCATAGGCA
AACTAATAGCTTGGATCTTGCTAGGTTTCTCGAACTTCATCTCCACGTACAAGCCTTTCATCAACTCAGGTGACAAGTTCAAATCT
TCAAACCTACTCGCTGATGTATACGGTGTGTCACCTGACGTAACCGCTTTGATGTTTGAGTCTTCGGGTTCGTCAAGGATAGATTC
ATGTTTCTCTTCTTCCTTGATACTTAAAGAGTTGAGCTCCGAGACTGCGTTTGCTTCCTCTTCGTCGTCATCCTCAACATCGCCCC
GCTTTGTCTTCTCCGTTGTTGTTGTTGTTGTCGTGGGCTCTGTGTTCTCGCCGGTGATTGATGCTTCTACGGAGGATGAAGATGCT
TCACCGGTGGGAAGTTTGTCTATAGTGTCGGCCATTCTTTTTAAAGTAAGGGATCTAGACTAGGCTGAGAATAAGATAATCAGAGA
AGAGGAGAGCAGATTGTGTTGAGTTCGTGGGTGCACGATCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_190879 DEAD-box ATP-dependent RNA helicase 38 [Arabidopsis thaliana]21728e-242
XP_002876189 hypothetical protein ARALYDRAFT_323856 [Arabidopsis lyrata subsp. lyrata]21711e-241
AAL09787 AT3g53110/T4D2_40 [Arabidopsis thaliana]21646e-241
XP_002326399 predicted protein [Populus trichocarpa]15841e-173
ADJ68231 DEAD box RNA helicase [Populus alba x Populus tremula var. glandulosa]15832e-173

Swiss-Prot top hits (Blast detail)Scoree value
Q93ZG7 DEAD-box ATP-dependent RNA helicase 3821778e-244
Q10RI7 DEAD-box ATP-dependent RNA helicase 3813264e-145
A6ZNQ1 ATP-dependent RNA helicase DBP57961e-083
P20449 ATP-dependent RNA helicase DBP57961e-083
Q09747 ATP-dependent RNA helicase dbp57772e-081

TrEMBL top hits (Blast detail)Scoree value
B9MTK9 Predicted protein15848e-174
B9S0B8 Dead box ATP-dependent RNA helicase, putative15713e-172
D6N3H0 RNA helicase-like protein15561e-170
B8LNL9 Putative uncharacterized protein13931e-151
C5WXS7 Putative uncharacterized protein Sb01g04657013607e-148

Arabidopsis top hits (Blast detail)Scoree value
AT3G53110.1 LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4); ATP-dependent helicase/ RNA helicase/ RNA-dependent ATPase21786e-245
AT1G72730.1 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative5692e-058
AT3G13920.1 EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor5612e-057
AT3G13920.3 EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor5593e-057
AT1G54270.1 EIF4A-2; ATP-dependent helicase/ translation initiation factor5531e-056

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
123  38%
 
102  25%
 
91  13%
 
112  25%

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