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Information for unigene UN16325
| FASTA Sequence |
| Unigene ID: UN16325 | Length: 1448 |
SSR | SNP | GGAAAGACCACACCACACACACGCACCTAGCGAGAGAGAGAGAGAGAAGAAATGGCTGCTTCAGTGATGCTTTCATCGGTGACGTT
GAAACCGGCGGGTTTCACGGTGGAGAAGATGTCGGCCAGAGGTTTACCGTCGCTCGCAAGAGCTTCTCCTTCTTCCTTCAAAATCG
TCGCGAGCGGTGTCAAGAAGATCAAGACCGACAAGCCCTTTGGAGTTAACGGCAGCATGGACTTGAGGGACGGCGTCGACGCCTCC
GGCAGAAAGGGCAAGGGTTATGGTGTTTACAAGTTTGTTGACAAGTATGGAGCTAACGTTGATGGATACAGTCCTATCTACAACGA
GGAGGAGTGGTCAGCGAGTGGTGATGTGTACAAGGGAGGAGTCACCGGATTGGCTATTTGGGCAGTGACGCTTGCCGGAATTCTCG
CCGGAGGAGCTCTTCTTGTGTACAACACAAGCGCTTTGGCTCAGTAAATCTTTTAAAAGACATGTTTCTCTCTATGTTTTGTGTTC
TCTGTTTCTCTCTTCTCTGTAATGCTCAGAACATACTTTTGAAATTTATAAAAGAACTCTAGTGTTTGTGTCTGTCCCATCTTTTC
AATGCACAAGAAAAATAACTTGAATACAGTATTATAGAGAAGAGAACCATGAGTGTTGTTGATTAGAACTCGCCAAGCGCGTCTTC
TTCACCTTCTTCATCATGTGAGACCGAGGAGGAGCTGCTGCTAAACAAAGGAGTTGATCGATGAACTTCTCCATCTAACATCGACA
ATCTCACTCTCTTTTCAATTTCGTCTTGAAGAGAAGGGTTCTCCCTTAAGTGCTGCAGTGCTTTCTCTCTTCCTTGCCCAAGCCTT
TGGTCTTCGTAGCTGTACCAAGAACCCTTCTTCACCACAACCTCCATAATCTCAGCACAATCAAGAACACATCCCAGTTTACTAAC
TCCTTCCCCAAACATAATCTCAAACTCTGCTTGCTTATACGGTCTCGAAACCTTGCTCTTCTGTACTCTCACACGAGCCCGAAGAC
CAATATCTTCATCCCCTTTGCTAGATTTGATCTTCCCAGCAGAACGAATTTCTAGTCGAACCGACGCAAAGAACTTCAACGCAATG
CCTCCGCTGGTCACCTCTGGATTACCGTAGTACACACCAATCTTGTATCTAATTTGGTTTAGGAAAATAAGTGTGCAACCAGCTTT
AGAGGCGTTTCCTGACATTTTACGAAGAGCTTGACTCATAAGACGAGCTTGTAACCCCATTTGCTGCATCCCAATCTCACCTTCAA
TCTCGGCACGTGGAGTAAGTGCTGAGACAGAATCAACACATATAAGGTCAACTGCACTTGAACGACACATACGGTCTGCAATTTCT
AAAGCCATCTCGCCATTATCTGGCTGACACACTATGAGATTTTCGACATCAACACCTAACGCTTTAGAGTAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_565198 DNA repair protein recA-like 1 [Arabidopsis thaliana] | 1250 | 5e-135 |
| AAA32855 replicase [Arabidopsis thaliana] | 1250 | 5e-135 |
| BAH56931 AT1G79050 [Arabidopsis thaliana] | 1123 | 3e-120 |
| XP_002332188 predicted protein [Populus trichocarpa] | 1083 | 1e-115 |
| XP_002529953 DNA repair protein reca, putative [Ricinus communis] | 1076 | 7e-115 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q39199 DNA repair protein recA homolog 1, chloroplastic | 1250 | 2e-136 |
| P48293 Protein recA | 743 | 1e-077 |
| Q7V9V8 Protein recA | 716 | 2e-074 |
| P14582 Protein recA | 715 | 2e-074 |
| Q3AMM5 Protein recA | 715 | 2e-074 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C0Z2K2 AT1G79050 protein | 1123 | 2e-120 |
| B9NAB1 Predicted protein (Fragment) | 1083 | 8e-116 |
| B9SVD4 DNA repair protein reca, putative | 1076 | 5e-115 |
| B8AN40 Putative uncharacterized protein | 1059 | 5e-113 |
| B9F9W5 Putative uncharacterized protein | 1059 | 5e-113 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G79050.1 DNA repair protein recA | 1250 | 2e-137 |
| AT1G79050.2 DNA repair protein recA | 777 | 1e-082 |
| AT1G79040.1 PSBR (photosystem II subunit R) | 671 | 2e-070 |
| AT2G19490.1 recA family protein | 474 | 2e-047 |
| AT3G32920.1 ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding | 325 | 3e-030 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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