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Information for unigene UN16720
FASTA Sequence |
Unigene ID: UN16720 | Length: 1528 |
| SNP | GGGGTTAAGTATGATGGATCGAGAAGAAGGCGCCGTGAAGGAAGAAGAAGATAAGCTCTCTGGTTACGCCACGCTTCCCAATACAT
ATAACCATCTCTGACGTCATCTTCTATCTTTATCCAATATATAAAACCTGTCGTGCCGATTCCTCTTCTGGAGACAATCAAATAAT
CAAACCTCTAATCGAACGCAAAAAAAAGAAGAAGCAGAGCTATGGATGCAAACCAACGAATCGCAAGAATCTCTGCTCATCTCAAC
CCTCCTAATCTCGATAAGAATGGTTCCGGGTCGGATCTGAGACGGGTGGGTTGTCGGGCAAAAGGCGGGTCTCCCGGATTCAAAGT
GGCGATACTTGGAGCAGCGGGAGGGATAGGACAGCCACTAGCGATGTTGATGAAGATGAATCCTCTGGTCTCGCTTCTCCATCTCT
ACGACGTTGCTAACGCTCCTGGTGTCACCGCTGATATTAGTCACATGGACACTAGTGCCATCGTTCGTGGATTTCTCGGGCAACCG
CAGTTAGAGGAGGCACTCACGGGTATGGATCTAGTGATTATACCAGCTGGAGTTCCGAGGAAGCCAGGGATGACGAGGGATGATCT
TTTCAACATCAACGCCGGCATCGTCAGGACGCTCTCCGAAGCTATAGCCAAGTGCTGTCCCAAAGCGATTGTGAATATCATCAGTA
ATCCGGTGAACTCCACGGTGCCGATCGCAGCGGAGGTTTTCAAGAAAGCTGGTACTTTTGATCCGAAGAAACTCATGGGAGTCACC
ATGCTTGATGTTGTTAGAGCTAATACTTTTGTGGCGGAAGTAATGAGTCTTGATCCTCGAGAAGTTGATGTTCCGGTTGTTGGAGG
ACACGCAGGAGTTACAATCTTGCCTCTGCTTTCTCAGGTGAAACCTCCTTGCTCTTTCACTCAGAAAGAGATTGAATATCTCACAG
ACCGCATCCAAAATGGTGGCACTGAAGTTGTCGAGGCAAAAGCTGGTGCAGGTTCTGCAACATTATCAATGGCTTACGCAGCAGTG
AAGTTTGCAGATGCTTGTCTCAGGGGTCTACGAGGCGATGCAAACATTGTCGAGTGTGCATTTGTGGCCTCTCATGTGACTGAGCT
TCCCTTCTTCGCATCAAAGGTGCGTCTAGGAAGATGTGGGGTCGATGAAGTGTACGGTCTCGGACCATTGAACGAATACGAGAGGA
TGGGATTAGAGAAGGCAAAGAAAGAGCTTGGAGGGAGTATTGCGAAAGGTGTTACCTTTGTCAAGAAGTAGTAAAGAGAATTGATA
AAAACACTTTTAGTTTTATCTTTTGGAATAGTGATTTGTTTGGAATAAGAACAATGCCTCGCAATGAAAGCTCCTGCGAGTAGAGT
CTGATGTTGAAGATTTAATAAACTGCAATCACTTTGTTCTTAGATACGGGAACGTTTATGAGTTGATATTCTTATCTTCTTGGTAT
GTTTCCTTAGTTTTATGTGCGTTTTTCTTCTGCTTAGTATTATTGCGCCTAAGATCAACTCCACAC
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GenBank top hits (Blast detail) | Score | e value |
XP_002880457 peroxisomal NAD-malate dehydrogenase 1 [Arabidopsis lyrata subsp. lyrata] | 1709 | 3e-188 |
NP_179863 malate dehydrogenase [Arabidopsis thaliana] | 1692 | 3e-186 |
XP_002522037 malate dehydrogenase, putative [Ricinus communis] | 1558 | 1e-170 |
XP_002310874 predicted protein [Populus trichocarpa] | 1549 | 1e-169 |
XP_002270921 PREDICTED: hypothetical protein [Vitis vinifera] | 1547 | 2e-169 |
Swiss-Prot top hits (Blast detail) | Score | e value |
O82399 Probable malate dehydrogenase, glyoxysomal | 1692 | 1e-187 |
P19446 Malate dehydrogenase, glyoxysomal | 1546 | 1e-170 |
P46488 Malate dehydrogenase, glyoxysomal | 1542 | 3e-170 |
Q9ZP05 Malate dehydrogenase, glyoxysomal | 1491 | 2e-164 |
Q9XFW3 Malate dehydrogenase 2, glyoxysomal | 1465 | 3e-161 |
TrEMBL top hits (Blast detail) | Score | e value |
Q0WUS4 Malate dehydrogenase | 1692 | 2e-186 |
B9S7S1 Malate dehydrogenase | 1558 | 7e-171 |
B9HFT0 Malate dehydrogenase | 1549 | 7e-170 |
A5BEJ8 Malate dehydrogenase | 1547 | 1e-169 |
A9PGE6 Malate dehydrogenase | 1515 | 7e-166 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT2G22780.1 PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1); L-malate dehydrogenase/ binding / catalytic/ malate dehydrogenase/ oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor | 1693 | 8e-189 |
AT5G09660.1 PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase | 1492 | 2e-165 |
AT5G09660.2 PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase | 1433 | 1e-158 |
AT5G09660.4 PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase | 1281 | 5e-141 |
AT5G09660.3 PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase | 1222 | 3e-134 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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