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Information for unigene UN17092
| FASTA Sequence |
| Unigene ID: UN17092 | Length: 1403 |
SSR | SNP | CTGCTTTGATCATATCCAATCATATTAAAACACAAAGACGAACAAGTCAAAGCAGAGCAGAGCAGAGCAGTGAGGGAACAAGCATG
GCAGCTTTATCATCATCCTCTCTGTTTTTCTCATCCAAAACAGCTATTCCCATCAATAATCTAACCCTCATCCCGACGTCTCTCCA
GCGCTTCTCTCTTCCCTCATCATCTTCTTCCTTTTCCTCTCTCTCTTCTTCTTCTTCTGCTTCTCTCTTCACCACACACTCTCTGA
AGAGTTCTCGAAGATCATCTCCTCAGGGATTCACCGTGAAGGCTGAGAAGAAGAATGTGCTTATAGTCAACACCAACAGCGGTGGT
CACGCCGTCATTGGCTTTTACTTTGCCAAAGAGCTTCTCTCCGCCGGCCACGCCGTCACCATTATGACTGTCGGAGAAGAATCTTC
TGACAAAATGAAGAAAACTCCCTTCAGCCGTTTCTCCGAAATTGTAAGCGGCGGAGGAAAGACGGTGTGGGGAAACCCAGCCGATG
TTGCGACTGTGGTCGGAGGTGAAACATTCGACGTTGTTCTTGACAACAATGGCAAGGACTTGGATACTGTCAGGCCAGTGGTGGAT
TGGGCTAAAAGCTCAGGCGTGAAGCAGTTCTTGTTCATAAGCAGTGCAGGGATCTACAAGTCCACCGAACAACCTCCTCACGTTGA
AGGGGACGCAGTGAAAGCCGACGCAGGTCATGTTGGAGTGGAGAAGTACTTAGCTGAAACTTTTGCCAACTGGGCCTCCTTTCGAC
CACAGTACATGATCGGTTCTGGCAACAACAAAGACTGCGAAGAATGGTTCTTCGACAGGATTGTGAGGGATAGACCAGTGCCAATC
CCAGGATCAGGATTGCAGCTAACCAACATATCTCACGTGAGAGACTTGTCTTCCATGCTCACTTCAGCTGTGACCAACCCTGAGGC
TGCCTCCTGCAACATCTTCAACTGCGTTAGTGACAGAGCCGTCACTCTTGACGGTATGGCCAAGCTCTGTGCCGCTGCTGCTGGCA
AAACCGTTGAGATCGTGCATTACGACCCTAAAGCCATTGGGGTTGACGCCAAGAAGGCTTTTCCATTCCGAAACATGCATTTCTAC
GCGGAACCAAGAGCAGCAAAGGATATATTAGGGTGGGAAAGTAAAACGAATCTACCAGAAGATCTCAAGGAGAGATATGAGGAGTA
TGTTAAGATTGGCAGAGACAAGAAGGAGATGAAGTTTGAATTAGATGACAAGATACTCGAAGCCCTCAAAACTCCAGTCGCCGCTT
AATCATATATACTATCTTCCTCTGTAAGCTACCCCCATATGTACTCTCTTTTTTTTCCCTCGGTTCATATGAGATGATGAACATGA
TTTCAGCTAAAAAGACCATTTAAATTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002878498 hypothetical protein ARALYDRAFT_486816 [Arabidopsis lyrata subsp. lyrata] | 1873 | 3e-207 |
| NP_191873 chloroplast stem-loop binding protein-41 [Arabidopsis thaliana] | 1851 | 9e-205 |
| AAP87140 mRNA-binding protein precursor [Nicotiana tabacum] | 1567 | 8e-172 |
| XP_002302114 predicted protein [Populus trichocarpa] | 1553 | 3e-170 |
| XP_002275066 PREDICTED: hypothetical protein [Vitis vinifera] | 1545 | 3e-169 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LYA9 Uncharacterized protein At3g63140, chloroplastic | 1851 | 4e-206 |
| Q9SA52 Uncharacterized protein At1g09340, chloroplastic | 534 | 2e-053 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q7X998 MRNA-binding protein (Fragment) | 1567 | 5e-172 |
| B9GSN8 Predicted protein | 1553 | 2e-170 |
| A5AWW0 Putative uncharacterized protein | 1545 | 2e-169 |
| B9H883 Predicted protein (Fragment) | 1539 | 1e-168 |
| Q9XEJ6 MRNA binding protein | 1523 | 7e-167 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G63140.1 CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA); mRNA binding / poly(U) binding | 1852 | 3e-207 |
| AT1G09340.1 CRB (CHLOROPLAST RNA BINDING); binding / catalytic/ coenzyme binding | 534 | 2e-054 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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