RadishBase

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Information for unigene UN17266

FASTA Sequence

Unigene ID: UN17266	Length: 1450	SSR	SNP
CTTCTTCTCTCGTCTCTAAATATTTCTGGAAGCAGCAGCATTCAACTGTACTGCAGATTCGATCGAAGTTTATTAGATCCGGGATT TTCCTCCCTATATATTTGTATAAAACTAAGAAAAAAGTTTCGATTTCTTTAAGCGCAGTTCGTGTTTGAATCCGCTTGAAATTAGA AAAACAAAAAAACATATTCTTTAGGGTTTTGGTTTAGTTTCGACTGTGGGTGTTGGATTAATATATATATATAAATATGGATAAGA AGAAGGTCGCCGTTCCACTTGTCTGCCATGGCCATTCAAGACCTGTTGTTGATTTGTTCTACAGTCCAATTACCCCTGATGGTTTC TTCCTCATCAGCGCCAGCAAAGATTCACATCCAATGTTGAGAAACGGGGAGACTGGAGACTGGATTGGTACCTTTGAAGGTCATAA AGGTGCGGTGTGGAGTTCTTGCCTCGACAACAACGCTCTACGTGCTGCTTCTGCTTCTGCTGATTTTTCAGCGAAACTCTGGGATG CGTTAACAGGAGATGTGCTGCATTCTTTTGAGCACAAGCATATTGTTCGAGCGTGTGCCTTCTCAGAGGATACAAAATTGCTGATC ACTGGAGGATTTGAGAAGATTCTTCGTGTATTTGACTTGAACCGGTTGGATGCACCTCCCACAGAAGTCGATAAATCTCCTGGATC CATCAGAACCCTCACATGGCTTCACAGTGATCAAACTATATTAAGTTCTTGCACTGATATTGGTGGCGTGAGGTTATGGGATGTTA GGAGTGGGAAGATTGTGCAGACATTGGAGACAAAGTCTCCTGTCACCAGTGCTGAAGTGAGCCAAGATGGACGATACATTACTACT GCTGATGGGTCAACTGTTAAATTCTGGGACGCTAACCATTTTGGACTAGTGAAGAGTTATGACATGCCATGCAATATTGAGTCTGC ATCTCTGGAGCCTAAATCTGGTGAAAAGTTTGTAGCTGGCGGTGAGGATATGTGGGTCCGAATGTTTGATTTCTACACCGGAGAGG AGATTGGATGCAACAAGGGGCATCATGGTCCGGTACACTGCGTGAGGTTTTCACCGACGGGTGAGTCGTACGCCTCGGGGTCTGAA GACGGGACCATCAGGATCTGGCAGACGACACCAAACCATAGTGTGGATGAAGTGGCTAAGAAGATTGAAGGCTTTCACATCAACAA AGAAGGAAAACCCGCAGAGAAAGTTTCTGATGCTTAGGCAGAAGAACACGGAAAAAGCCTTTTTCTCTTAGTTCTTGATGCGCTAT GTTTCGTGTGTGTTTGTGTTTCCTGACTGAATATACAGAGAAAAAGAAAAACACAAGGACCGGACCTTTCCTTATCTTTTAGTTTT TCTTGGATCTTTTTCGTTATTATATAAAACCTTGGGACCTGTTGTGCAATTTATGAAATAATTTGACTTTTGCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002891712 transducin family protein [Arabidopsis lyrata subsp. lyrata]	1588	3e-174
NP_849800 transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]	1582	2e-173
NP_566519 transducin/WD40 domain-containing protein [Arabidopsis thaliana]	1565	1e-171
XP_002885098 transducin family protein [Arabidopsis lyrata subsp. lyrata]	1563	2e-171
XP_002298116 predicted protein [Populus trichocarpa]	1491	5e-163

Swiss-Prot top hits (Blast detail)	Score	e value
Q54LT8 Serine-threonine kinase receptor-associated protein	789	6e-083
Q5ZL33 Serine-threonine kinase receptor-associated protein	765	3e-080
Q9Y3F4 Serine-threonine kinase receptor-associated protein	761	1e-079
Q5E959 Serine-threonine kinase receptor-associated protein	760	1e-079
Q9Z1Z2 Serine-threonine kinase receptor-associated protein	760	1e-079

TrEMBL top hits (Blast detail)	Score	e value
Q9SSS7 AT1G52730 protein	1582	1e-173
Q9LW17 Expressed protein	1565	1e-171
B9GKZ1 Predicted protein	1491	4e-163
B9GWN6 Predicted protein	1482	4e-162
B9RUZ3 Serine-threonine kinase receptor-associated protein, putative	1470	1e-160

Arabidopsis top hits (Blast detail)	Score	e value
AT1G52730.2 transducin family protein / WD-40 repeat family protein	1582	6e-176
AT1G52730.1 transducin family protein / WD-40 repeat family protein	1582	6e-176
AT3G15610.1 transducin family protein / WD-40 repeat family protein	1565	5e-174
AT1G15470.1 transducin family protein / WD-40 repeat family protein	1343	3e-148
AT2G46280.3 TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1); nucleotide binding / protein binding	174	1e-012

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	5			24%


21	3			14%


19	2			10%


18	2			10%


20	2			10%


7	2			10%


8	1			5%


11	2			10%


9	2			10%

Unigene Members	Member information