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Information for unigene UN17715

FASTA Sequence
Unigene ID: UN17715Length: 1053 SSRSNP
TAGCAGTAGTAATAAACAAAACAATTTGCATCATTTAGTATAAAAATACACAACTGTAAACGCAAACAAGAGAACGTGATAGATAA
TACAAAAGGTAGCAAAGACATATAACTTTTATCACACAGAAAGCCAGAAACGGATAAATAAAACATTCACACCATTCGTTCATCAG
GGACAAAGATTTGGTCGTGTTTTAATAGATACAGAGAGGATTATTTGGTGAGTTTGAAGTACAAGATGAGGAAAATAGCGGCGACC
AAAGCGGTGATAATGGCTCCAATGGTCCATTTGTTCCTGTTCATCCTCCTCGTCATGCCCGTCAAGATTTTCTTGCTCTTTCCGAC
ATTTTCGTCTACTCCACTAAGCGTGTCGCCAGTGCGAAGGAGAGACTGTCTCTGACTGTGCAAGTCTTGGAGGACAGAGACGCCAA
GCTCTTCAGTCTCAATCATCATTCTTCGACTGTCCTTGATTCTATCAGTGGTACGACCCAATCGATCAGTGGACATCATCAATCTC
GCTCTTTGATCAGCTGAAGCCGTCTTAGTGTCAGCAAGGCCAGCTTCGAGCAAGTCGTCACGAGCAGCAGCGTTCAAGTTAGCAGA
GGAGGTGATAGTCTTGAGTTCGGTTTTGAAGTTGTTGAGATCAGACTTGAACTCTCTTAATTTGACAAGGAGGGTGGTCTTAACGC
TCGGTGGGAGGCTCCTCGCCTCAACATCCATTTTCCTAATCAAAGCTTCAGCATTATCGAGGCCAGACCTTATTTCAGAGAGCTTC
TGCTTCTTTTGCTCTCCGTGGAGGGAAATAGCAGAGGAGCATTTCTTGGAAAGATGGGCGGAGAGGTCGCAGTATTGGCGCTCGTA
TCCGTTAAACACCTCACTCATTCTGATTGATTGATTGATACTCTCTCTCTCTCTCTTCTGATAACACGAAGCACCCTCGGAATCGG
AAGATAGAGATCCAAAGGTAAGGTAAGGAAAGACGACGGCGATGAATTTGTTGATGGATTGAATGTTATTATTATTTTTATTTTTC
TTTCTGGGGATGGTCGGAAAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ34483 unnamed protein product [Thellungiella halophila]9502e-100
XP_002870775 v-SNARE AtVTI1a [Arabidopsis lyrata subsp. lyrata]9214e-097
NP_198767 vesicle transport v-SNARE 11 [Arabidopsis thaliana]9206e-097
AAF24061 v-SNARE AtVTI1a [Arabidopsis thaliana]9162e-096
XP_002877155 vesicle transport v-SNARE 13 [Arabidopsis lyrata subsp. lyrata]8759e-092

Swiss-Prot top hits (Blast detail)Scoree value
Q9SEL6 Vesicle transport v-SNARE 119256e-099
Q9LVP9 Vesicle transport v-SNARE 138702e-092
Q9SEL5 Vesicle transport v-SNARE 126488e-067
O89116 Vesicle transport through interaction with t-SNAREs homolog 1A2974e-026
Q9JI51 Vesicle transport through interaction with t-SNAREs homolog 1A2876e-025

TrEMBL top hits (Blast detail)Scoree value
Q307Y3 Vesicle transport v-SNARE 11-like7977e-083
B9SVJ2 Vesicle transport V-snare protein vti1a, putative7951e-082
C6T736 Putative uncharacterized protein7932e-082
C6TGN3 Putative uncharacterized protein7932e-082
Q3HVM2 Putative uncharacterized protein7905e-082

Arabidopsis top hits (Blast detail)Scoree value
AT5G39510.1 SGR4 (SHOOT GRAVITROPSIM 4); receptor9264e-100
AT3G29100.1 VTI13; SNARE binding / receptor6845e-072
AT1G26670.1 VTI1B; SNARE binding / receptor/ soluble NSF attachment protein6487e-068
AT5G39630.1 vesicle transport v-SNARE family protein4202e-041

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
118  33%
 
62  8%
 
910  42%
 
83  13%
 
101  4%

Unigene MembersMember information