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Information for unigene UN18467

FASTA Sequence
Unigene ID: UN18467Length: 1650 SSR 
GGATTTCTCCCTCCATCTCCCTCTCCTCTCCTCTCCTCTCCTCTTCCTCCGAAGAAGAAGAAGACGATCGCAAGGGATTAGGATCT
CTTCTGCTGTGAGCGAAGGAAGAAGATGAGGGAGATTATTAGCATTCATATCGGACAAGCCGGGATCCAAGTTGGAAACTCGTGCT
GGGAGCTTTACTGCCTCGAACATGGCATCCAGCCTGATGGCATGATGCCCAGTGATACTACGGTTGGTGTTGCACACGATGCGTTC
AACACGTTTTTCAGCGAGACTGGTGCTGGAAAGCACGTACCTAGAGCTATCTTCGTTGATCTCGAGCCTACCGTTATCGACGAGGT
CCGTACCGGAACGTACCGGCAGCTTTTCCATCCTGAGCAGCTTATCTCTGGTAAAGAAGACGCTGCTAACAACTTCGCCAGAGGCC
ATTACACTGTTGGGAAGGAGATTGTGGACTTGTGTCTTGACCGTGTGAGGAAACTCGCCGATAACTGTACTGGATTGCAAGGGTTC
TTGGTGTTTAATGCTGTTGGTGGTGGAACTGGTTCTGGTTTGGGTTCTCTCTTGTTAGAGCGTTTGTCTGTTGATTATGGTAAAAA
GTCTAAACTTGGCTTCACCATTCACCCTTCTCCTCAGGTTTCTGCTGCTGTTGTTGAGTCTTACAACAGTGTTCTTTCAACCCACT
CTCTACTCGAACACACCGATGTTGCTGTCCTCTTGGATAACGAAGCCATCTATGATATTTGCCGCAGATCCTTAGATATCGAGAGG
CCTACTTACACGAACCTCAACAGGTTGATATCTCAGATCATATCGTCCTTGACAACGTCGTTGAGGTTTGATGGAGCTATTAATGT
GGATATCACCGAGTTCCAGACCAATCTTGTCCTTTACCCCCGTATCCATTTCATGCTGTCCTCTTATGCTCCGGTTATCTCAGCAG
CAAAGGCTTACCATGAGCAGCTTTCGGTCCCTGAGATCACTAATGCCGTGTTTGAGCCAGCTAGCATGATGGCCAAGTGTGACCCG
AGGCACGGGAAATACATGGCTTGTTGTTTGATGTACCGTGGAGATGTTGTTCCTAAAGATGTTAATGCTGCTGTCGGTACTATCAA
GACTAAGAGGACTGTTCAATTTGTTGACTGGTGTCCCACCGGTTTCAAATGTGGAATCAATTACCAACCTCCAACAGTTGTTCCTG
GAGGCGACCTCGCTAAGGTCCAGAGAGCGGTCTGCATGATCAGCAACAACACAGCCGTTGCAGAGGTGTTCTCACGGATCGACCAC
AAGTTTGATCTGATGTACGCGAAGAGAGCGTTTGTGCACTGGTACGTTGGTGAAGGAATGGAGGAAGGTGAATTCTCAGAGGCACG
TGAAGACTTGGCGGCACTGGAGAAAGATTATGAAGAAGTTGGTGCTGAAGGTGGAGACGATGAGGAAGATGAAGGTGAAGAGTATT
GACACCTTCTTCTCTCAAGCAATGTGCAACCAAAAACGTTTTTCAAATTTCTATTTCTACTTATGATTCTTGTGGATTACATGTTT
CTTTTTAATCCTGTACAATATTCGTTGCACTTCCTGTTTTTATTTTGGTTCATTCATTTGGTAAAGCGACCGTTGAGAATTTAAGT
GTCCATTTCTGTAACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_197478 tubulin alpha-3/alpha-5 chain [Arabidopsis thaliana]23367e-261
NP_001060075 Os07g0574800 [Oryza sativa Japonica Group]22882e-255
O22349 RecName: Full=Tubulin alpha-3 chain; AltName: Full=Alpha-3-tubulin22821e-254
ABD92942 alpha tubulin-1D [Triticum aestivum]22802e-254
NP_001105588 tubulin alpha-6 chain [Zea mays]22793e-254

Swiss-Prot top hits (Blast detail)Scoree value
P20363 Tubulin alpha-3/alpha-5 chain23363e-262
P28752 Tubulin alpha-1 chain22881e-256
O22349 Tubulin alpha-3 chain22825e-256
P33627 Tubulin alpha-6 chain22791e-255
Q43473 Tubulin alpha-1 chain22753e-255

TrEMBL top hits (Blast detail)Scoree value
A2YMX5 Putative uncharacterized protein22882e-255
Q0PVB0 Alpha-tubulin22882e-255
A4K4Z3 Alpha tubulin-1A22801e-254
C0PKT5 Putative uncharacterized protein22792e-254
B9T1E6 Tubulin alpha chain, putative22773e-254

Arabidopsis top hits (Blast detail)Scoree value
AT5G19770.1 TUA3; structural constituent of cytoskeleton23372e-263
AT5G19780.1 TUA5; structural constituent of cytoskeleton23372e-263
AT1G04820.1 TUA4; structural constituent of cytoskeleton22394e-252
AT1G50010.1 TUA2; structural constituent of cytoskeleton22394e-252
AT4G14960.2 TUA6; structural constituent of cytoskeleton22361e-251

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
91  20%
 
74  80%

Unigene MembersMember information