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Information for unigene UN18576

FASTA Sequence
Unigene ID: UN18576Length: 1276 SSR 
GGTTGAAGAGAGAGAGAGATCGGAGATGTGTAGCTTAACCAGTCGTCCGACCGGCGAAGCTAAACAGAGTAAGAGAAGATCGAAGA
GGATCAGGAAGAGGAAACAGATGGAATCAACTTCCATGGACAAGTCTCCTTCGAATCTTGAAACGTCTCGTAAGCAGATCAGGACG
AAGACGAAAAGACCCAAGTTTCTGAGTCTCAAGCTCGAACTCAGCACTTCTCACGAGATCGAAGAGAGTCCCGGAGCCACTAAGAA
CAAGAAGAAGAAGAAGAAACACAAACCGTCGAAACAGAGCAAAACGAAAGGAGCTGATACGACGGCGTTTAAGGAGAAGAAGAGAG
CGGATACTGTAGGAGGAGGAGAGAAAGAAGAGGAGCAGTACGAAACCGTTGCAGCTTACCTCTTCAGCTCCGCCGCCACCGACAGT
TCAATGTCTTCGATAAACGATCTCCTCCCTTCCTCCGCCGCCCATGTGGATTGCAGCGAAAGAAAGGATCTGTCTCCGTACGACCG
CGGCGGATCGCCGTCTTCTTCGCTTTTAAAGACGGCGATGAGGAAAGGAGCGAGCAAGGAAGAGGAGACGACGGAGGAGAGGTGGG
TGAGTTATTCGGAGGTTGTGGAGGAGGTGATGAGTCGGAGCGGAACTCCACGGCCTGATGGAAAGGATAGACGGCGTTCGCTGGCT
CTGAAGCTTGATTACGAGCAGGTGATGGAGGCTTGGTCGGATAAAGGTACTCTTTATGTCGACGGAGAACCGCCGCAGACGGTGCC
GGACTTGCATGCTTCTGCTGATGTGTTTACTGGCGGTGGAGATTCTGGAAGTTTGTGGACGGTGCCGGAGATGGAGACGACGGAGA
GGTTGTGGAGAGGGCATAGAGAAGCGAGCTTGCTCCGGTATAAGGAGAAACGACAAAACCGTCTTTTCTCTAAGCGGATTCGATAC
GAAGTTCGTAAACTCAACGCTGAGAAACGTCCTCGTGTTAAGGGCCGGTTTGTGAAGAGAGACGATTAGTAAAACCCACTAAGAAC
TTGTTGTTTAGACTTGTGGTTTGTGGACATACTAGTCTATTGAAATAACCAAGCGGCAGAACCGGAGTATACCGAGACATGAAAGG
TGTTGGTCTGTATAGGGGTCTCGACCAGCTCGGTTTTGCAAAACTTTCGGTTTGTTTGCAGCTCTATTATTGGAAAAGTTAACTAA
TTTGTACCAAATCATCTGAACAAATAATAATAACGAAAGTGGATATCAACCACGCATCATACTTCTTGTTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_568300 CCT motif family protein [Arabidopsis thaliana]12272e-132
XP_002873661 hypothetical protein ARALYDRAFT_488277 [Arabidopsis lyrata subsp. lyrata]12102e-130
AAM63153 unknown [Arabidopsis thaliana]11591e-124
CAB87776 putative protein [Arabidopsis thaliana]11214e-120
XP_002328680 predicted protein [Populus trichocarpa]2478e-019

Swiss-Prot top hits (Blast detail)Scoree value
Q8RWD0 Zinc finger protein CONSTANS-LIKE 162375e-019
Q9C9A9 Zinc finger protein CONSTANS-LIKE 72375e-019
Q8LG76 Zinc finger protein CONSTANS-LIKE 62034e-015
Q9LU68 Protein CHLOROPLAST IMPORT APPARATUS 21864e-013
Q9M9B3 Zinc finger protein CONSTANS-LIKE 81783e-012

TrEMBL top hits (Blast detail)Scoree value
Q949T9 Putative uncharacterized protein At5g1437012271e-132
Q8LDL1 Putative uncharacterized protein11591e-124
Q9LY92 Putative uncharacterized protein F18O22_16011212e-120
B9N084 Predicted protein2476e-019
B8AI17 Putative uncharacterized protein2467e-019

Arabidopsis top hits (Blast detail)Scoree value
AT5G14370.1 LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CIL (TAIR:AT4G25990.1); Has 1815 Blast hits to 1506 proteins in 139 species: Archae - 0; Bacteria - 8; Metazoa - 291; Fungi - 53; Plants - 1145; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink).12277e-135
AT1G73870.1 zinc finger (B-box type) family protein2374e-020
AT1G25440.1 zinc finger (B-box type) family protein2374e-020
AT1G68520.1 zinc finger (B-box type) family protein2034e-016
AT1G07050.1 CONSTANS-like protein-related1953e-015

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
104  57%
 
92  29%
 
181  14%

Unigene MembersMember information