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Information for unigene UN18923
FASTA Sequence |
Unigene ID: UN18923 | Length: 1359 |
SSR | | GTAAGTAAAGTTGTTCTTTAAATTAAACGTAAATGCTGCAACAGCGTACTGCTTATAAATTACAAAACTTTGGAAAACTAGAGAGA
AAGAGAAGAGGATATAGAAAGAGACAGCAGACATGCATCTTTCTGATTCTCTCTGCCTACTACTACTACTACTCCCAGTGAAACGG
GAACGTCTGTGGAAGAGCCACAGCCTCATTACCAGATCCATCAGAGACTGCACTCGCGTTCTCAAACAATCCGGACCCATAAAAAC
CCGTCTCTTGGGACAAAGAAAGTGGTGGCTGAAGCAAATGAGAGGAAGATGATGACAGAAGAGAGAGAGCGCAATCAGAGTCATGG
ATGCAACTCGTCATTCTCGAGCAGTCTTCTTCTTCTTGCAAGAAAGGAAACTGTTTCCCTCTGTTGTTTGGAGAAGAAGATATTGG
GAACGTAATGCCTGTCTTTGCGGGACAAGAACCAGCATAGCTCTGGTTCTGCCCGTAACTTGAACCGTTCGCCATTGCTACGCTTA
CAAGACCGTTTCCCCAGCTCGGACTCGCAACAGATTTTGTAGTTGGAAACACATGTGGAGAGCTAGAAAAATCCAGCAATTTGCTA
CCTTGGAAGAAAGTTGCAGAACGACCGATATGGTCGGGCTGGGGCTTCCGTCTTCTTCTGTTGTGTCCATCAAGACGTTTCCTACA
ACTTTTCTTTTCTTCATCAAACTCTTCCAAAGCATGAAACCTGCTGCATTGTTGACAAAACCTCTGTTTATGGCCATTGATTGTAA
CCACAGGAGTTTTTGAATGTACATCACAGACCTTATGTCTTTTATGATACTCTCTACAGTTACTAAAATCAGAATCACATCCATCA
ACCAGACAAACCGGGATCTGGTTGTTCCCTCTTGTCCTCTTGGACGAACCAGAGGAGCTTCTTGAAGCCTCTGGTGCGCTCTCTTT
CAACTTACCAAGACTTATCACTTGCTCTGTGTTACCAAAAGCAGAGGAGTGTCCGATGTTTCTTCCAAGTTTCAGATCAAATGAGA
AATCTCCTTTTGGTGGTGAGGATGACCCACCAAACGAGATCGATGCATGGACTGGGGTTATATCCGGTACAGATTCTTGGTCGAAC
TCGGAGAAATAACCGGAGCTGGGTTTGAAGTTCCAATCCATTTAAAGCTTCTTCTTCTTCTTCTTCTTCACTCACAAATCCATACA
CCTACCAGTGGTCAGTAGAAGAAACTTAAAAAGAGAAGAATGACATATGCAAAAAAAAATTGACAAGTGAGAAAGAGAACGGATGG
GTTTAGTGATAGAAAGTGGAGACAACAAGAGTGGCTGCTGCTGCAATAATGCAATAAGAGAGAGCGAAG
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GenBank top hits (Blast detail) | Score | e value |
NP_568731 squamosa promoter-binding-like protein 13 [Arabidopsis thaliana] | 1326 | 7e-144 |
AAM61173 unknown [Arabidopsis thaliana] | 1230 | 9e-133 |
XP_002865818 hypothetical protein ARALYDRAFT_918095 [Arabidopsis lyrata subsp. lyrata] | 1137 | 6e-122 |
XP_002318746 hypothetical protein POPTRDRAFT_570289 [Populus trichocarpa] | 567 | 7e-056 |
XP_002280160 PREDICTED: hypothetical protein [Vitis vinifera] | 564 | 2e-055 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q8LFW6 Squamosa promoter-binding-like protein 13 | 1326 | 3e-145 |
Q0J0K1 Squamosa promoter-binding-like protein 18 | 397 | 2e-037 |
Q0JGI1 Squamosa promoter-binding-like protein 2 | 397 | 2e-037 |
Q6YZE8 Squamosa promoter-binding-like protein 16 | 386 | 3e-036 |
Q2R3Y1 Putative squamosa promoter-binding-like protein 19 | 376 | 4e-035 |
TrEMBL top hits (Blast detail) | Score | e value |
B9DI20 AT5G50570 protein | 1326 | 5e-144 |
B9I3U3 Putative uncharacterized protein | 567 | 5e-056 |
A5BME3 Putative uncharacterized protein | 564 | 1e-055 |
B9RAD2 Squamosa promoter-binding protein, putative | 554 | 2e-054 |
B8Y9B2 Squamosa promoter-binding protein | 550 | 4e-054 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT5G50570.1 squamosa promoter-binding protein, putative | 1327 | 2e-146 |
AT5G50670.1 squamosa promoter-binding protein, putative | 1327 | 2e-146 |
AT5G50570.2 squamosa promoter-binding protein, putative | 1327 | 2e-146 |
AT1G27370.1 squamosa promoter-binding protein-like 10 (SPL10) | 335 | 2e-031 |
AT1G27370.2 squamosa promoter-binding protein-like 10 (SPL10) | 335 | 2e-031 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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