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Information for unigene UN19878

FASTA Sequence
Unigene ID: UN19878Length: 1151 SSRSNP
AAAGTCACTTCCCCAAGTTTCTTTTCTAGTTAAGTTTTTCAGTAAATTACATTGATCATCGAGATGCAAGATAAATTGAGAAGAAA
CTAAAATGCAAAAACAGCATTGGTAAAATCTGTGTGCAGCCTCTCTCTCTCTCTCTCTCTCTCTGCAAATGCAGGTTAAAGATTAC
AATCTTCTTTTGTCATTCTTTTCAACGGTTCAAAACAGATGCTCTTGAGCAGAAGTACATTACAAATTCTCCTAAGGAAGTGACAG
AAACCTTACAGAACCGTGAAGCTTGTCAGACGATAAATTTGAGCATTCGAGCAGTAGCTACACTTTCTATTCCTCCATAGGACCAG
AACCGTCATTAACACCAGATGCAGGATCAGGAACTATCAGGCCTGCGGGAACCTGGCCAAACTTCAAAGCCTGTTCGAGTCTGGCA
ATTTCTTCTATCGTCTGGGAATTGATAATTGCAGCCTTGATTGCTAAAATTTGCTCCTGTGTTGGGGCCACAACTTTAGGAGCCTC
TGCATCTTCTGTAGTATCCGACACTTTTTGAACCTCCTGCTGAGATACCTTCTTAACCTCTTCTTCTGCTTCCTTAGATGAAAACA
AAGCCGCAGCTTCAGCTCTCTCCTTGTCTTTGACTTTAATGAAATCCAGTACCCGAAGCGATTTAAGCTTGTGAATCACATAAAGG
CGATAATTCGGCTTTTTGGTGATATTATTATCCAATAAACTAAGGTACTGAAGCTTCGGAATGGAGGCAAGGGGATCGATCTCAAC
CAAATTCACAAGCCTGTTGTTCGTAAGAACCAAAGTGTGCAGCTTCGGTAGGAACTCTCCAATGTTAGGGTTTATCCGAGTGATCC
GATTGTTATTTACAATCAGAGTCCCTAACCGGTTGAGAAGTGGGAAGTTTTCCAGCTTAACTATCTCATTATCAGACAGATCTATT
GTATCGAACTGGTCCTCGGTAGCACCCAAGTTCTCGATTACAGGAATCTTGTTGCCTCTTAGCTCCAACTCTCGCTCCTTGATGGC
ATTGAAGAAGTGAGGACTGTTCCAGATCAAATCAGCTGTGAGCTTCACCATTGTTCTACTTCTAGGGTTTTACAGCTTCTCGCTCT
CTGCTCCTCGGATTCAGAAGAAATAGAGAACCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002892521 U2 small nuclear ribonucleoprotein A [Arabidopsis lyrata subsp. lyrata]11161e-119
CAA48890 U2 small nuclear ribonucleoprotein A' [Arabidopsis thaliana]11106e-119
NP_172447 U2 small nuclear ribonucleoprotein A' [Arabidopsis thaliana]11098e-119
ADG27843 U2 small nuclear ribonucleoprotein A [Gossypium hirsutum]9735e-103
XP_002303732 predicted protein [Populus trichocarpa]9645e-102

Swiss-Prot top hits (Blast detail)Scoree value
P43333 U2 small nuclear ribonucleoprotein A'11093e-120
P09661 U2 small nuclear ribonucleoprotein A'5564e-056
Q4R8Y8 U2 small nuclear ribonucleoprotein A'5564e-056
P57784 U2 small nuclear ribonucleoprotein A'5512e-055
Q9BLB6 Probable U2 small nuclear ribonucleoprotein A'4822e-047

TrEMBL top hits (Blast detail)Scoree value
D6N3G9 U2 small nuclear ribonucleoprotein A9733e-103
B9GYT1 Predicted protein9643e-102
B9GMX5 Predicted protein9528e-101
B9RG43 U2 small nuclear ribonucleoprotein A, putative9528e-101
B8AEK8 Putative uncharacterized protein9482e-100

Arabidopsis top hits (Blast detail)Scoree value
AT1G09760.1 U2A' (U2 small nuclear ribonucleoprotein A); protein binding11121e-121
AT3G50690.1 leucine-rich repeat family protein1381e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
65  36%
 
83  21%
 
92  14%
 
124  29%

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