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Information for unigene UN19882
| FASTA Sequence |
| Unigene ID: UN19882 | Length: 1032 |
SSR | SNP | GGAAGTTACAAACGTCTCACATATTTAACTTAATAAGTCCATTACACATAATAGCATTTAAAATGTATCTATATACCACATATAAT
TCAGATCAAAACAGACAATTAAAAAGAGTAGATATTGAATAATGTTTTTCATTGTAAAAACACACACAATTAACACTCATCATTGT
GTTAACAAAATATATGATCATTACCACTTAAGTCTCTTAACTTCAAGCTTTGCTCTTGCACTTCTCCATTGCTCTCGGAGCGAGAC
CAATGGCGTCAGATCCTTTCATGAGACGTAAACGCTTGCATGTATCAACGAACATTGGCCAAGGGACGTCGCCGACGAGCATCCAG
TCACCGTCTTTGTCTTCATAAGAGGGAACATAGTCCCAAGTATTCACTATAGCCATGTTTCTCTCATTCATGAAGTCTATCATTCC
TTCTTCTCCTCCATATTTTCCCATGGTAAAAGAGCTGAACATGTTGGACAAAGCATTAGAGAGTTCTTCGTAGCTCTTATACATCT
TCAAGTCGACTTTCCTCAAGTACGGTGCTCCGTCCATCGACACCTTCACAAACGCAGCTGTCTCCGTGCCACCGCTTGATTTTTGG
CACGAACCCAACACGTTCTTCCGGTATGACCTCACAGGTGGCCATCCCACAACTTGTGCCTTGGCAGGAGGCTTGGCGGGATCTTT
GGGCGATGAACTCTTTTCCTTGGAAACAGAAGTCGCGACGTCATGAGTCTTAGATCCTTCCTTGCTTTCAGGTTCATTGTTCAGAT
TCAGCTTCAAATCAACCGTCTCCGAGAACCCTCTCTTGGTTCCAGTCACCGGAGCCACCGTTTCTCCGCCGGGAAGACCAAGACAC
AGCTCAGTCTCTCTCAGATTCAGCTCGACAGTGCCCATCATTGTCAACCTCTCTTCTTCTTAATGTTCTTCTTCTTGGGAAGGTGA
TGAGGAAGATGGAAAATTGATTTTTATAAAAACTCACAAATAATACAAAATGGGATGAGTCTCTATTATATCTCTCTCTCTCCCCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_171921 auxin-responsive protein IAA17 [Arabidopsis thaliana] | 1082 | 9e-116 |
| XP_002889499 hypothetical protein ARALYDRAFT_470401 [Arabidopsis lyrata subsp. lyrata] | 1082 | 9e-116 |
| AAM64837 putative auxin-induced protein, IAA17/AXR3-1 [Arabidopsis thaliana] | 1077 | 3e-115 |
| AAC39440 IAA17/AXR3-1 protein [Arabidopsis thaliana] | 1072 | 1e-114 |
| BAJ33922 unnamed protein product [Thellungiella halophila] | 1057 | 7e-113 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P93830 Auxin-responsive protein IAA17 | 1082 | 4e-117 |
| Q38832 Auxin-responsive protein IAA14 | 737 | 4e-077 |
| P13089 Auxin-induced protein AUX28 | 571 | 7e-058 |
| A2XLV9 Auxin-responsive protein IAA13 | 523 | 3e-052 |
| Q10D34 Auxin-responsive protein IAA13 | 523 | 3e-052 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WRB1 IAA14 | 737 | 6e-076 |
| A5B9V1 Putative uncharacterized protein | 719 | 8e-074 |
| D3K0H7 Indole-3-acetic acid inducible 17 (Fragment) | 689 | 2e-070 |
| Q9XEY5 Nt-iaa28 deduced protein | 663 | 2e-067 |
| B9RTF4 Auxin-responsive protein IAA7, putative | 635 | 4e-064 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G04250.1 AXR3 (AUXIN RESISTANT 3); transcription factor | 1083 | 3e-118 |
| AT4G14550.1 IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14); protein binding / transcription factor/ transcription repressor | 738 | 3e-078 |
| AT5G65670.2 IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9); transcription factor | 502 | 6e-051 |
| AT5G65670.1 IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9); transcription factor | 489 | 2e-049 |
| AT3G23050.1 IAA7 (INDOLE-3-ACETIC ACID 7); transcription factor | 483 | 1e-048 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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