 |
Information for unigene UN20228
| FASTA Sequence |
| Unigene ID: UN20228 | Length: 1515 |
SSR | SNP | GGTCCAGAAAAGATTCTTGTCGTTTTTACATTATAATAATATAAAGATTTTTTTTTGGTTTCTTTGGGTTTAGAAGAAATGAACAG
ATGCACAAGCAAGCAAAGAAGAAACGATAGTAAACATTAGTTTCCCACATGTTTCACTCCGTACCCATCAACTACTTGGTTTCTGT
ATGTACAGAGAGATACAATAACAAACACCTTCTCTTAATCATGGCTCAAGTTTCATCTGTAGTGTTGGCTCAGAACAACTGTTGTT
GTTATTGCTCTGTTGCTGGACATCTCCAAACCCCATCTGAACAACGCTTTGCAGATCATTTTCCCAGAATCCTTGTGTCTCAGCTT
GAACAAATCCATCGCTGGAAGGGAAATGTGTGTCTGAAAATCTAGGCATGTTCTTGGCAAGAGAATAGTATCCAGATGGAATTCTT
TGCTCTGAGCAAGCCATTGCGTAAAGAGACTGCGTTAATGACTCTCCCGGTTGAATCATCTCTGTGGATAAAGCAGCATTAGGGTT
AAACTCCATCCTTGGATTTATAGTAGCCAGCTTCATTGACAAGAACTCGACTTGTCTCTGCAAGGACTGCACATAGTTGATGATTT
CATCAAGCATAACTGCTTTCCCAGTTATCCGGTTGCAACCAGGAACCAGATCCTGAAGCAAAGTCATCCTCTCGCTGATCTTCTCT
CTTCTTGCTCTTTCAGCGAGGCTGTGGCTATCAGTTGCCTGACCCCTTCTAGCCCTAACATGAATGTAATCTTTGGGGGGCTCAGG
AGGCTTAGCATCATCCTTATTGTCTATTACGTTCTTGCTGCTTCCAGCTTCGTCCTGCTTGCTTCTCTTGGATCCAACAATCTCTC
CTGAAACCTTAGAATTGGAAGCTGTAAGAGAGGAGGAAGCAGGAGAGTCCTTGCCATTACCTCCAGAAACAGAAACAGGGATCGAC
TTTCTCTTCCTGGAGTTTGGTTTCGGTGTCTGAACTCGATGATCCGAATGCCTTGGATCCAGCAAGGAGCTCTTGTTGCTGTCTTG
TCCTGTTAGCTGATCGGATCCGAACTGACCCCCCGGATAAGGAGGGAAGCGGATCTCTTGAGGAGGGTTGTTGCAGAATCTGCCGA
GGAGATCGCCGATGGTTCCTTCGTTGCCAAAGGGATCGCTCTGACCCAAAGGTAAGTACTTTATTCTTTCATTCTCCATCTTCTTC
TTCTTCTTAATAGTTCTATCTTGTAATGAGATTCTGAATCAGAGAATAAGACAGGAAAGCTACTTCTACATGGGAAAGATATGAGA
TATTTTTTGAAACACAAGTAAGAAAGGGACCACACTTTTGTTTCTGTGTGACTCTTCTTCTTCTTCTTCAGACAAATTATCAACTT
ATACCTCCGAGTAAAGATACTGAATTTCCCTGGAAAAATGTAACCAATTTTGGGTTTTGTTTGCGTTAAAAAAACGGAAACGAGTC
AAGAAAATTTGCAGAGGGTACAAGAAGGGAGGGAGCTAGCTATGGATGAATCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002885587 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1208 | 4e-130 |
| NP_189011 transcription factor bHLH77 [Arabidopsis thaliana] | 1195 | 1e-128 |
| XP_002264969 PREDICTED: hypothetical protein [Vitis vinifera] | 531 | 1e-051 |
| CAN73299 hypothetical protein VITISV_005183 [Vitis vinifera] | 526 | 5e-051 |
| CBI17295 unnamed protein product [Vitis vinifera] | 526 | 5e-051 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LK48 Transcription factor bHLH77 | 1195 | 5e-130 |
| Q9CAA9 Transcription factor bHLH49 | 479 | 5e-047 |
| Q9FJL4 Transcription factor bHLH78 | 442 | 1e-042 |
| Q9SRT2 Transcription factor bHLH62 | 418 | 6e-040 |
| Q6NKN9 Transcription factor bHLH74 | 393 | 5e-037 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2A9V1 BHLH transcription factor, putative | 535 | 3e-052 |
| A5AD41 Putative uncharacterized protein | 526 | 3e-051 |
| B9IAB6 Putative uncharacterized protein | 520 | 2e-050 |
| C5XG71 Putative uncharacterized protein Sb03g043690 | 505 | 8e-049 |
| B9RRL5 Transcription factor, putative | 501 | 2e-048 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G23690.1 basic helix-loop-helix (bHLH) family protein | 1196 | 3e-131 |
| AT1G68920.3 basic helix-loop-helix (bHLH) family protein | 488 | 4e-049 |
| AT1G68920.1 basic helix-loop-helix (bHLH) family protein | 480 | 4e-048 |
| AT1G68920.2 basic helix-loop-helix (bHLH) family protein | 480 | 4e-048 |
| AT5G48560.1 basic helix-loop-helix (bHLH) family protein | 442 | 9e-044 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
