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Information for unigene UN20844
FASTA Sequence |
Unigene ID: UN20844 | Length: 797 |
| SNP | GGATTCTCAAAAGCCATGACTTCTCTCTCCATATCCTTCCTTTTAACTCTCTGCCTCTTCGTAACCCCATCTCTCTCATCAGACTC
TGACCCTTTACAAGACTTCTGCGTCGGCGATCTCAAAGCTTCTCCTTCCCTCAATGGCTTCCCTTGCAAGTCACCAGTCTCCGCTT
CTGACTTCTTCTTTTCCGGCTTAAGCATTCCTCTAAACACCTCAAACCGTAACGGCGTAGCCGTGGCCCCCGCCAACGTCCTGACC
TTTCCGGGTCTAAACACTTTAGGACTCTCGATGAACAACGTCGAGTTCGCTCCAGGCGGTGTGAACCCTCCTCACTCGCACCCTCG
TGCAACCGAAGCAGGAGTTGTGATCGAAGGCTCTGTTTTCGTCGGGTTCTTGACCACGAACAACACTTTGTTCTCGAAGGTTATAC
ATGCCGGAGAAATGTTTGTTGTCCCTAGAGGGTTGGTTCATTTCCAGTGGAACGTTGGTAAAGGGAAAGCACGTTTGGTAACTTCC
TTTAACAGCCAGCTTCCAGGATCGGCTGTTCTGCCTAGTACTCTGTTTGGTTCTATGCCTGAGATTCCAAACGCGGTTTTGACCAA
AACGTTTAGGACTGATGATGTAACTGTGAACAATCTCAAGTCCAAGTTTGCTGTTTGAATTTTTATTTATTTTATGTTTTCTACTA
ATATGATATTTCTCAATTCTATTTTATTGCAGTAATGGTGTACATTTATGTGTAATAATAGTTATGAAAAATATATCTTGACCAAA
AGTTATAAAGCACAATTAACATT
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GenBank top hits (Blast detail) | Score | e value |
XP_002893025 hypothetical protein ARALYDRAFT_472121 [Arabidopsis lyrata subsp. lyrata] | 991 | 2e-105 |
NP_173332 germin-like protein subfamily T member 2 [Arabidopsis thaliana] | 988 | 4e-105 |
XP_002893024 hypothetical protein ARALYDRAFT_889326 [Arabidopsis lyrata subsp. lyrata] | 923 | 2e-097 |
NP_564067 germin-like protein subfamily T member 1 [Arabidopsis thaliana] | 920 | 3e-097 |
AAB51565 germin-like protein [Arabidopsis thaliana] | 902 | 4e-095 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q9LMC9 Germin-like protein subfamily T member 2 | 988 | 2e-106 |
P92995 Germin-like protein subfamily T member 1 | 920 | 2e-098 |
Q9S772 Germin-like protein subfamily T member 3 | 633 | 3e-065 |
Q7F731 Germin-like protein 1-1 | 570 | 6e-058 |
Q6I544 Germin-like protein 5-1 | 555 | 3e-056 |
TrEMBL top hits (Blast detail) | Score | e value |
Q29PR5 At1g18980 | 988 | 3e-105 |
B9R911 Rhicadhesin receptor, putative | 660 | 3e-067 |
B9IEI8 Predicted protein | 654 | 2e-066 |
A0MEG4 Putative uncharacterized protein (Fragment) | 633 | 5e-064 |
Q8H2A6 Germin-like protein | 623 | 7e-063 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT1G18980.1 germin-like protein, putative | 989 | 1e-107 |
AT1G18970.1 GLP4 (GERMIN-LIKE PROTEIN 4); manganese ion binding / nutrient reservoir | 921 | 1e-099 |
AT1G74820.1 cupin family protein | 634 | 2e-066 |
AT1G09560.1 GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / nutrient reservoir | 540 | 2e-055 |
AT1G02335.1 GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.); manganese ion binding / nutrient reservoir | 537 | 4e-055 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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