Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN21079

FASTA Sequence
Unigene ID: UN21079Length: 1010  SNP
GGATATCAACTCTGCTCATTCTCTCGGCGTGGAGGCTGCTTTCATCAACCAGAACTTCGCTCAGCAGGTTTTGGTTAAGAATGGAA
AGAGGGAGACTTTTGATGAGCCTATCCCTAATGCTAACGAAGGGTGAAGAGAATGCTTCTATTGCTTATAGGTATAGGAGGTGGAA
GCTTGATGATAGTATGTATCTAGTCGCTAGGTGTGAGTTGCAGAGCACTGTTGAACTGAATAACCAGAAATCGTTCCTCACTTTGA
ACGCTCTTAACGAGTTTGATCCTAAGTACTCTGGTGTTGATTGGAGACAGAAGCTAGAGACTCAGAGAGGTGCGGTTTTAGCTAAT
GAGTTGAAGAATAATGGTAATAAGTTAGCTAAGTGGACCGCACAGGCTCTGTTGGCTAATGCGGATATGATGAAGATTGGTTTTGT
TTCTAGGGTTCATCCTCGTGATCATTTCAACCATGTTATTCTATCGGTTCTGGGGTATAAGCCGAAGGATTTTGCTGGGCAGATTA
ATCTGAACACTTCCAACATGTGGGGAATTGTCAAGTCCATTGTTGATCTGTGTATGAAGCTGAGTGAAGGAAAGTATGTTCTAGTG
AAGGATCCGTCCAAGCCTCAAGTTAGGATTTACGAGGTTCCAGCTGATGCTTTTGAGAATGATTATGTGGAAGAGCCTCTACCTGA
GGATGAACAGGTTCAGCCACCTGAGGAGAACAACACTGAAGGAGGAGGAGCAGAGACTAATGAAACTGCAGAGGATAAGAAACCCG
AAGGTCAGGCCTGATTATGGTAAATGTCAAAGACTTGTTTTGAGTTTTTACCTTTCTTTAATGTTCCAAAGTTGTGCTCTTTTTGA
AGAGCTGAACGGTTCATTTTACTGGTTTATGCTTTTATCTTGTAGAAGATTTTTGAACCTTATGAGTCTTCTTGTTTGAATAAACT
ATTGAGAGCTTTTGCAATTTATGGCTAAAACATTCAGTGTTTACTCCACTTGATTTTGAAAGTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_199245 translation initiation factor eIF-3 subunit 7 [Arabidopsis thaliana]10577e-113
XP_002863589 hypothetical protein ARALYDRAFT_917176 [Arabidopsis lyrata subsp. lyrata]10471e-111
NP_193830 translation initiation factor eIF-3 subunit 7 [Arabidopsis thaliana]10102e-107
AAG53638 initiation factor 3d [Arabidopsis thaliana]10102e-107
AAL38704 putative translation initiation factor eIF3 [Arabidopsis thaliana]10102e-107

Swiss-Prot top hits (Blast detail)Scoree value
P56820 Eukaryotic translation initiation factor 3 subunit D10108e-109
Q16UF8 Eukaryotic translation initiation factor 3 subunit D5492e-055
Q7QBW3 Eukaryotic translation initiation factor 3 subunit D5483e-055
B0X6P7 Eukaryotic translation initiation factor 3 subunit D5431e-054
Q0ZB77 Eukaryotic translation initiation factor 3 subunit D5422e-054

TrEMBL top hits (Blast detail)Scoree value
Q9FKV6 Eukaryotic translation initiation factor 3 subunit 710575e-113
Q8VZ60 Putative translation initiation factor eIF310101e-107
Q9C5Y8 Initiation factor 3d (Fragment)10101e-107
B9N3G6 Predicted protein9723e-103
B9RBD0 Eukaryotic translation initiation factor 3 subunit, putative9544e-101

Arabidopsis top hits (Blast detail)Scoree value
AT5G44320.1 eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative10582e-115
AT4G20980.1 eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative10116e-110
AT4G20980.2 eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative10116e-110
AT4G20980.3 eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative10116e-110

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  25%
 
181  13%
 
191  13%
 
62  25%
 
112  25%

Unigene MembersMember information