RadishBase

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Information for unigene UN22327

FASTA Sequence

Unigene ID: UN22327	Length: 702		SNP
GCACAGCAAAGCTCGTTATCAATCAAACTAATAATATATTTATTTGCTTTCACAAAGTTTCTTCAAACATAGTAGTATACAAGCAA AGCATTATTCTCAATATGTTTTACACAACACACATACAGTTCTTGAACATTGTCTGAGGGAAGGGTCCTCAAGCCTTAGTCCTCAC CACAAGAACAGGGCACTTAGCCTTGTTAACACAGTAATTGCTAACACTCCCAAGGAAAGTCCTTTCTAGTGCCCCTTTACCATGGC TCCCAACGATAAGCAAATCAACACCAAGCTTCTCAACAGCATCACAGATCGCTTCTTTAGGGTTCCCAAACTCCATCACCTTCTTT GGTGTAGTAACCCCGCTCTCAGCGCAAATCTTGGTCCCTTCATCAATCCGATTCAACGCTGCGTTTTTGTAGTTCTGCTGCATTGA GTTTATCAGCTCTATCGGAGCGGCGCCGTAAGAGGAAGCGTAGACGGAGCTGAGATCGAGCTGAGGCTGAGCGGTGAAGAGGATGA TATCGGAATCGGCGAGGCTGTCTTTGAGATACGCGAGCGTCCATCGGAGAGCGTGTTTGCTGCAATCGCTTTCGTCGATCGCCACC ATCACCTGCTTCTTCCCGCTTTTCTTCTCTTCCGCCATTGTTTTTCTTCCTTCCTTCTTCCGATTGAGTTTTGAGTTGACTACCCT TTTGATCATTTTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_564927 universal stress protein domain-containing protein [Arabidopsis thaliana]	702	5e-072
XP_002888652 universal stress protein family protein [Arabidopsis lyrata subsp. lyrata]	699	1e-071
XP_002312405 predicted protein [Populus trichocarpa]	456	2e-043
XP_002314854 predicted protein [Populus trichocarpa]	451	6e-043
XP_002526987 conserved hypothetical protein [Ricinus communis]	414	1e-038

Swiss-Prot top hits (Blast detail)	Score	e value
P42297 Uncharacterized protein yxiE	159	2e-010
Q57997 Uncharacterized protein MJ0577	144	1e-008
Q4L751 Putative universal stress protein SH1215	140	4e-008
Q57951 Uncharacterized protein MJ0531	133	2e-007
P74897 Uncharacterized protein in QAH/OAS sulfhydrylase 3'region	126	1e-006

TrEMBL top hits (Blast detail)	Score	e value
Q9C9G5 At1g68300	702	4e-072
B9HJ41 Predicted protein	456	1e-043
B9HWG5 Predicted protein	451	5e-043
B9SLW8 Putative uncharacterized protein	414	9e-039
B6T3Q3 Ethylene-responsive protein	354	8e-032

Arabidopsis top hits (Blast detail)	Score	e value
AT1G68300.1 universal stress protein (USP) family protein	703	2e-074
AT3G11930.4 universal stress protein (USP) family protein	217	4e-018
AT3G62550.1 universal stress protein (USP) family protein	214	9e-018
AT3G11930.1 universal stress protein (USP) family protein	212	1e-017
AT3G11930.2 universal stress protein (USP) family protein	212	1e-017

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	7			37%


10	4			21%


12	3			16%


9	3			16%


6	2			11%

Unigene Members	Member information