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Information for unigene UN22666
| FASTA Sequence |
| Unigene ID: UN22666 | Length: 1226 |
SSR | SNP | GGATTTGTTATGATTGAAAGCCACTTCACAAAGAAGAGGGTTTTAGAGTCATGAATTTACTACACAGCGGAAAATAACACAGTTTG
GGAACCAAAAGCCAAATGCACATTTTGAAAAAAAACAGACAAGCAAGTAGAAATGGACTTCCCCAAGAGAATGGTTACTATATTAT
TATTATTACTTACTTACTACTACTCTAAAAACATTATATATACATTCATATAAAGGTTTACCAGAACCGGTTTAGCCTTTTATAAA
AAGCTCTTCTTCTTCTTCTTATTAATCTTACTCACTTGACATGGCAATCGTAAGGAGAAGAAGCAAACACTTGATCTGGAACCACT
AGAGGTAGCTTCTCTATGTACACAAACAGCCTCTTCTTATTCTCCCTCTCCACTGTATGGAGACTGACCGTATCTGATTTCTCCAT
CAACATCCACAGGTCCCCTGAGTTCACTCTCTTCAGACTGTCCCTGCAGAAAGGGCATGACTCTGACCTCCCATGCCAGTCACGGT
AACACTTGATGCATAAAGAATGCGTACAGTTGGGAAGAACAACCATGCTGTTCATCTCCATACATATACCACACTCTTCGTCTCTC
TCCACGTCAATCTCCGAGAGCTTTACTCTTTCCATCTCCTCTTTGTTCCTGTACCTTACTTTGCAGACCTCTTTCTGTTTGCGGTC
ATCCACGTCTGTGATGCCCCTTTCTAGTTGCAACAGCGATGGAAATATCACAGCATAGAAATCTTTAATACTGGTTTTTCTCTCGT
AAACCGACATTGTGGTCTTCCCATCCGCATAGGTCATGTAAATGAGAACTCTGAGCAAACCGAGTGCACCTGCCAGGTGGCAATCA
GTCCACTGGACAAGAAAGAGTAGAAACTGAGCTGCCGGGTTGTAAGATAGCCTCATCTGAACACGAGCTCCATCCTTCTCCCGAGG
ATAATCTAAAGCTACAGTGTTAGCGTGTTGGATATCTGCTTCGAGAGCTTTCAGAGAATCCTTGAACGAAACTCTTGCCATGGAAC
GTCAATTTCCAGCGATGAGAAGAAGAAGAAGAAGGCGAAGATCAGAAGCAAAGAAAAGTTTGATGCTTTAGAAGAGAAGATATTTC
CACACACCCCAAATTCGATGATCGATACTTTCAGAGATGAGAGAAGGATGATGGGTCTTTTGGTAATTTTGTAATTCTAGATAAGC
CTCTTTTGTGCTTTCGGTTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_190300 RING/U-box domain-containing protein [Arabidopsis thaliana] | 1243 | 2e-134 |
| AAM67171 RNA-binding protein-like protein [Arabidopsis thaliana] | 1243 | 2e-134 |
| NP_001190025 RING/U-box domain-containing protein [Arabidopsis thaliana] | 1135 | 8e-122 |
| XP_002525634 ubiquitin-protein ligase, putative [Ricinus communis] | 1034 | 4e-110 |
| XP_002313384 predicted protein [Populus trichocarpa] | 1017 | 4e-108 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L8R1 RNA-binding protein-like protein | 1243 | 2e-134 |
| Q9SD57 At3g47160 | 1243 | 2e-134 |
| B9SI15 Ubiquitin-protein ligase, putative | 1034 | 3e-110 |
| B9HP46 Predicted protein | 1017 | 3e-108 |
| A5BMW9 Putative uncharacterized protein | 915 | 2e-096 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G47160.1 protein binding / zinc ion binding | 1244 | 7e-137 |
| AT5G58787.1 zinc finger (C3HC4-type RING finger) family protein | 1068 | 2e-116 |
| AT5G01520.1 zinc finger (C3HC4-type RING finger) family protein | 844 | 2e-090 |
| AT5G01520.2 zinc finger (C3HC4-type RING finger) family protein | 654 | 2e-068 |
| AT5G58787.2 zinc finger (C3HC4-type RING finger) family protein | 585 | 2e-060 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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