RadishBase

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Information for unigene UN23005

FASTA Sequence

Unigene ID: UN23005	Length: 1741		SNP
GGATAGTTAAATATCTGATCCCCCAGTAACAGAGAAAGAGAGTCAGAGAGATCGAAAATGGTGACTAATACTGAAGTGGTATCTCC CGCGAGCAACGGCGTTGACGGAGGATGTTGCAAGTCAGGTCCTGGTTACGCGACGCCACTCGCCGCCATGTCTGGTCCATCGGAAA AGCTCATCTACGTCACCGCCGTCTACAGTGGAACGGGACGAGAGAAGCCTGATTACTTGGCAACAGTAGATGTTGATCCAAACTCA CCAACATATTCAACCGTCATCCACAGGTTACCAATGCCTTTCCTGGGTGATGAGCTTCATCACTCTGGCTGGAACTCTTGCAGCTC TTGCCATGGTGATGCTTCCGCTGACCGACGTTTTCTCGTCTTACCATCCCTTATATCTGGTCGCATCTATGCGATTGATACAAAGG CAGACCCGAGGGCACCTTCTTTGTACAAGTACGTGGATCCTAAAGAGATCGCTGATAAGACTGGACTGGCTTATCCACACACAGCT CATTGTCTTGCCTCTGGTGAAATCTTGGTGTCCTGTCTTGGAGACGAAGAGGGAAACGCCAAGGGGAATGGGTTTCTTCTTCTCGA CTCTGATTTCAACATCAAGAGCAGGTGGGAGAAAGAAGGACATAGTCCCTTGTTCGGTTATGATTTCTGGTATCAACCCCGGCACA AGACGATGATAAGCACTTCTTGGGGAGCACCTAAAGCCTTCACCAAAGGTTTCGATCTCCAACACGTTGCTGATGGCTTATACGGA AGTCATCTCCATGTTTACAGTTGGCCTGGAGGTGAAATGAAACAATTAATTGACCTTGGACCAACTGGCATGTTACCTCTAGAGAT AAGATTCTTGCATGATCCGTCTAAAGATACAGGGTATGTTGGGGGTGCTCTGTCGAGTAATATGATAAGATTTTTCAAAACAGTGA TGAAACATGGGGCCATGAGGTGGTTATCCAAGTTAAACCACTGAAAGTAGAGAACTGGATTCTACCAGAAATGCCGGGGCTTATCA CCGACTTCTTGATCTCCCTCGATGACCGGTTCCTCTACTTTGTGAACTGGCTTCATGGAGACATTCGTCAGTACAACATTGAAGAC CCTGAAAACCCTGTCTTAACCGGACAAATATGGGTGGGAGGATTACTACAAAAGGGCAGTCCTGTTAAGGCGGTTGGAGAAGACGG TAACACTTTCCAATATGATGTTCCTCAGATCAAGGGGAAATCTCTAAGAGGAGGACCTCAAATGATCCAGCTGAGCCTCGATGGGA AACGATTGTATGCAACAAACTCGCTCTATAGTGCATGGGATCGTCAATTTTACCCGGAACTCATGGATAAAGGATCACACATAATA CAGCTTGATGTTGATACAGAGAAAGGTGGTCTCTCCATAAACCCTGATCTCTTTGTGGACTTTGGTGATGAACCAGAGGGTCCTGC GCTTGCCCATGAGATGAGGTATCCAGGTGGAGACTGCACTTCCGATATTTGGATTTGAGTCTGGCCTGTTTATATGGTGAGTTGTT GTGCTACGCTTAAACTGAGTTTTTATTAGTTTGTTGAATAAAAAGCGTAAGTAATAAGAGGTCCCCTATATTTCGTGTGTTGATGG TGTGTAGACAATTTATACTTTGTTCGTAAAGTTGGCCTCCTTGTGGCTAATAATGCTTTGTAATAAAACTTTCTACATTTCGAGTA ACACACTATTCGGTTTGTTTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002868319 hypothetical protein ARALYDRAFT_915496 [Arabidopsis lyrata subsp. lyrata]	1445	1e-157
NP_193139 putative selenium-binding protein [Arabidopsis thaliana]	1439	7e-157
AAK32898 AT4g14040/dl3061c [Arabidopsis thaliana]	1388	6e-151
E71401 probable selenium-binding protein - Arabidopsis thaliana	1385	1e-150
NP_193140 selenium-binding protein 2 [Arabidopsis thaliana]	1384	2e-150

Swiss-Prot top hits (Blast detail)	Score	e value
O23264 Putative selenium-binding protein	1439	3e-158
Q52KZ7 Selenium-binding protein 1-A	902	6e-096
Q6DCH7 Selenium-binding protein 1-B	897	2e-095
Q8VIF7 Selenium-binding protein 1	892	8e-095
Q569D5 Selenium-binding protein 1	883	9e-094

TrEMBL top hits (Blast detail)	Score	e value
Q9ASS5 AT4g14040/dl3061c	1388	4e-151
Q93WN0 Putative selenium-binding protein	1384	1e-150
Q8L7F3 Selenium-binding protein-like protein	1376	1e-149
O23265 Selenium-binding protein like	1317	7e-143
Q93WS1 Selenium binding protein	1292	6e-140

Arabidopsis top hits (Blast detail)	Score	e value
AT4G14030.1 SBP1 (selenium-binding protein 1); selenium binding	1439	3e-159
AT4G14040.1 SBP2 (SELENIUM-BINDING PROTEIN 2); selenium binding	1384	6e-153
AT3G23800.1 SBP3 (selenium-binding protein 3); selenium binding	1253	1e-137

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	1			5%


8	7			32%


9	6			27%


7	5			23%


19	1			5%


18	1			5%


21	1			5%

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