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Information for unigene UN24177

FASTA Sequence
Unigene ID: UN24177Length: 1062  SNP
GGGAAATCCCTAAAACTGGAAAAGTATCGTAAAGCGGCAGCTTAGGGTTATTGCCTCTTTCACCATGAGATCCGCTAGAAAGGCTG
TGGCTGCTAGAAAGGCTGTGGCTGCTAGAAAGGCTGTGGCTGCTAGAAAAGCCTCTTTGGAGAAGTACAGATGCAAGCCCCGAGCT
ATGATTTCTGTGGAGGGATACGACCCTTGTCTGCCTGAGGATGATCTCAAGAATGAATTGATTAATCACTTCAAATCATGTGGCGA
AGTCTTTAATGTTATTCTTCGCGAAGACCCTGATAGCCCTAATCTGGACAGACGTGCTTTGGTTATTCTTCTCGGAGAAGGCGCAG
AAGAGAAGGCCTTGCAACTTAATGGAACTGACATTGGTGGATGGAAGGCTCTTGTTAAAGTTGAACCAGAGGAGGAAAGAGACGAG
GAGGCAGACCTTTATAGATCCTCTCTGGCTGACGAAATATATAATGACCGCAGATTTTGGTTTGGCGTTGCCGTTAGGGGATATGA
CACTTCCCTTCCTGCAGATGAAGTCGAGAGCGCTTTGACGAAACACTTCTCTTCCTGTGGAGAGATCACCCATGTTTTTGTCTCTA
CTCTCGATAAGAAGACTAATATCTATTTTCACGAAAAAGAAGGAGAAGCTAGGGCGCTGGATCTTTGTGGAACTGAAGTGGGAGGT
TCTAAAATAGCTGTTTGTCTCTTAGCTACAATCTTTACTAACCGTCCCCCTCCCGGCGGTGGAATTTGTTACGGCTACTCTGTCCC
AGCTCATATGATTGAGTTTACCCGCGAGATCCACGACAAGGTCGCTGCTTTTAAGAAGCAGAGGGCTGCTTTTAAGAAGCAGAGGG
TTTCTGTCTAGAAAATCTCTCTCAAACATCTATCTTTGGTGTTTAATAATTAAATAAATCGTGTGAGCTTGTACAATGCAACCTTG
GGGCTTTCTTACTTATGCTTATTGTCAGAGCTCATTATTATGTATGATGAGCCGTTTGTGTGTGTGTCTGGATGATAAACGTACTC
TTAATAATTATTATCTTTACTTTTATGTTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002873094 predicted protein [Arabidopsis lyrata subsp. lyrata]3023e-025
XP_002883446 predicted protein [Arabidopsis lyrata subsp. lyrata]2952e-024
XP_002893783 predicted protein [Arabidopsis lyrata subsp. lyrata]2881e-023
XP_002871038 predicted protein [Arabidopsis lyrata subsp. lyrata]2753e-022
NP_195968 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]2485e-019

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9LZD9 Putative uncharacterized protein F12E4_2502483e-019
Q67YA0 Putative uncharacterized protein At5g035001732e-010
Q9FVQ1 NuM1 protein, putative1632e-009
Q9M994 F27J15.291632e-009
Q9LZD6 Putative uncharacterized protein F12E4_280 (Fragment)1605e-009

Arabidopsis top hits (Blast detail)Scoree value
AT5G03480.1 nucleic acid binding / nucleotide binding2482e-021
AT5G53700.1 INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT5G03480.1); Has 74 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).2142e-017
AT5G03495.1 nucleotide binding1739e-013
AT1G48920.1 ATNUC-L1; nucleic acid binding / nucleotide binding1631e-011
AT3G09160.1 RNA recognition motif (RRM)-containing protein1622e-011

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
66  23%
 
812  46%
 
94  15%
 
122  8%
 
72  8%

Unigene MembersMember information