RadishBase

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Information for unigene UN24894

FASTA Sequence

Unigene ID: UN24894	Length: 1295		SNP
GTAAGACTTTTATTCAGGATAGAGTTTGTGGAATCATAGATTCTCTAACAATCATTGATATGAGTCATATGACGATGGATGTCCAC AAATACTTGTTGAACTCTATATATCATTACAAGAAAAAAGAACATGCAAGGACCACGAGAGTCTGTGATATGGAAATGGAGACGTC CACTTTGGTCTTGAAGAAGCTTTTAGTTCTTGACATCATGTAGCTTCATTACGCCTAGGCTTCATTATACTCCTTTTATCATTTCT GGTTCATAGCCGCCTTTTTCAGTCTTTCCATGACCTGGTCTTCATAAGCTTGGTAACCAGCACCAACTATGTTACTCTGCGGTTCT GCTTCTGCAGATTTCTTAGCGGTTTGAAAGTCGGTTTGTGCTGCTCTTTGAAGAGGTACAACTAGCAATGGGTTAGAGAGATCCCC ACACAATGTTCTCGTCGCTGCTACAGCTCCATCTTTAGTAGCCATTACAATGAGAGCGGAGGAGCCTTTCTTCTTGGTACTCCTGA TAACAACATCTTCAACCTCACCAAACTCTGAAAACACTTCTCTCAGCCTTCCCGCGCTATACCCTCCACCAATCGTTTCCCAAGAA ACCTTCAAAACTCTCTCTTTATCTAGCTGAACACTAGCTCCTCCACCTCCACTTCTATCTTCTTCTCTTCTCTTTCCATCTACACC GCCACCGCCACTCTCAGGAGGAGTTTCAAAACCGCCTCTCTTCTTTGCATGTTGCGCACGTATCCTGTCCACCTCCTCCTTAAGCT TCCTTGCGATTCTCTCCTCTTCATCATAAGGTCTAGCAGACGCACGACTAGGTGCAAAACCGGAACGCTCCCTTTCCTCCAGATCA GACATCATCTTGCGCCTCTTGGAATCCACCTGCGATTTCTTGTGCTGTTTCTCGCGCTGGATCCTAAGAAGATCGTCAAAGAGCTT CCGAGCTTTGTCGTCTTTGAGAACCTCGTAAGATGTCTTGAGCCTCTGGAATTTCTCGTGAGCATCAGGATCGTCTGGGCGTTTGT CCGGATGCAAGTCCAGAGCTTTCACCCTGTATGCTTTTGAAATATCCTTCTCGCTAAGATTCTGAGCTTCTTCTCCAGAGGGTAGC CCTAGAACTAAGTAATGGTCCACAAACTCCTCCATTTTCTTCCTCCTTTCGTCTAATATGACAGAACAACCTTTGAGAGAATTGAT GCCAAGGAGGAGGAAGATGAATCAGTCGATCGCGTGATTCGTCGTGGATTGAAGAAGATTTTGAGTTTAGGTTTTGCCAACCCCAG TTTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_197749 DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]	1207	4e-130
XP_002874140 DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]	1197	6e-129
BAA97241 unnamed protein product [Arabidopsis thaliana]	1184	2e-127
CBI25124 unnamed protein product [Vitis vinifera]	843	6e-088
XP_002275857 PREDICTED: hypothetical protein [Vitis vinifera]	832	1e-086

Swiss-Prot top hits (Blast detail)	Score	e value
Q9NVM6 DnaJ homolog subfamily C member 17	276	2e-023
Q91WT4 DnaJ homolog subfamily C member 17	270	8e-023
Q2KI83 DnaJ homolog subfamily C member 17	269	1e-022
Q9P7C6 Pre-mRNA-splicing factor cwc23	189	2e-013
Q9UBS4 DnaJ homolog subfamily B member 11	180	2e-012

TrEMBL top hits (Blast detail)	Score	e value
Q8L7M3 At5g23590	1207	3e-130
Q9LT05 Dbj\|BAA91724.1	1184	1e-127
B7FJY1 Putative uncharacterized protein	848	1e-088
A9NX26 Putative uncharacterized protein	646	3e-065
B9S9V4 Pre-mRNA-splicing factor cwc23, putative	464	4e-044

Arabidopsis top hits (Blast detail)	Score	e value
AT5G23590.1 DNAJ heat shock N-terminal domain-containing protein	1207	1e-132
AT5G23590.2 DNAJ heat shock N-terminal domain-containing protein	1207	1e-132
AT1G59980.1 ARL2 (ARG1-LIKE 2); heat shock protein binding / unfolded protein binding	151	4e-010
AT5G48030.1 GFA2 (GAMETOPHYTIC FACTOR 2); heat shock protein binding / unfolded protein binding	149	7e-010
AT1G16680.1 DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative	141	6e-009

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	2			25%


9	2			25%


11	4			50%

Unigene Members	Member information