RadishBase

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Information for unigene UN26267

FASTA Sequence

Unigene ID: UN26267	Length: 709		SNP
AGGCTGGAACAGAAATGGTACTACTTAAATCGAATTGGGGAACAAGATGAGAAATAAATACCAAAACATAGCTTAGAATCCCAACG ATAAAGCACAACAAAGAGATTATCCTTTTTTCTAGCAAAACTGAGACTAAGACAAGACCCTGTTTTCAAACTCCAAATGTAAAATG ACAGCTCAGATGGTATAATAATTAACTTAGATGATTCCAATTTTGTTAGCAACATCCAAAGCATCATAATCAGGAGTCAATCTCAC GTACGCCTTCTTCGTTCCATCAGGCCTGATGAGTGTGTTGACTTTCTTGGTCTGAATGTCATACATCTTCTTGACAGCATCTTTGA TCTTCTTCTTGTCAGCACGGATATCAACAATAAAGACCAAGGTGTTGTTGTCTTCGATCTTCTTCATGGCAGACTCGGTGGTGAGT GGGTACTTGAGGATTCCGTAGTGGTCCAACTTGTTCCTTGGAGTTGCACTGATGCGTGGGTACTTGGGGTCTCTAGCCTTTGTCAA TGTCTTTGGCCTGTGGAATGTCACCTTCGTCCTGATCTTCTTCACCTTCTTCTTAATGATTTGCCCTGATTTCACCGCTTTCGCAG CTTTCAAGGCCTTGGCCTTTGGGTCAGCCTTCTTGGTTACATCAACTTTAGCTGGAGCCATTACTCAAAAGTCAGATCCTTTCCAC AAAATCTGGAGCGGCGAAAAA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ABB97038 unknown [Brassica rapa]	772	4e-080
BAJ33853 unnamed protein product [Thellungiella halophila]	752	8e-078
NP_191088 60S ribosomal protein L23a-2 [Arabidopsis thaliana]	733	1e-075
XP_002862452 60S ribosomal protein L23A [Arabidopsis lyrata subsp. lyrata]	728	5e-075
XP_002876293 60S ribosomal protein L23A [Arabidopsis lyrata subsp. lyrata]	725	1e-074

Swiss-Prot top hits (Blast detail)	Score	e value
Q9M3C3 60S ribosomal protein L23a-2	733	6e-077
Q8LD46 60S ribosomal protein L23a-1	722	1e-075
Q9AT35 60S ribosomal protein L23a	689	8e-072
Q07761 60S ribosomal protein L23a	682	5e-071
O22644 60S ribosomal protein L23A	641	3e-066

TrEMBL top hits (Blast detail)	Score	e value
Q2V603 Putative uncharacterized protein	772	3e-080
B7FGR0 Putative uncharacterized protein	691	7e-071
A8MS83 Uncharacterized protein At3g55280.3	673	8e-069
A9PAS4 Predicted protein	673	8e-069
C6T5B2 Putative uncharacterized protein	672	1e-068

Arabidopsis top hits (Blast detail)	Score	e value
AT3G55280.1 RPL23AB (RIBOSOMAL PROTEIN L23AB); RNA binding / nucleotide binding / structural constituent of ribosome	734	5e-078
AT3G55280.2 RPL23AB (RIBOSOMAL PROTEIN L23AB); RNA binding / nucleotide binding / structural constituent of ribosome	734	5e-078
AT2G39460.1 RPL23AA (RIBOSOMAL PROTEIN L23AA); RNA binding / nucleotide binding / structural constituent of ribosome	723	8e-077
AT2G39460.2 RPL23AA (RIBOSOMAL PROTEIN L23AA); RNA binding / nucleotide binding / structural constituent of ribosome	723	8e-077
AT3G55280.3 RPL23AB (RIBOSOMAL PROTEIN L23AB); RNA binding / nucleotide binding / structural constituent of ribosome	700	4e-074

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


20	1			5%


10	7			37%


11	8			42%


8	2			11%


6	1			5%

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