RadishBase

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Information for unigene UN17193

FASTA Sequence

Unigene ID:UN17193

Length: 1015

GGAGAGCATAAGCTAAGTGTACAAAACATTTTGTAACTATACCAAGTTTTTTTTTTTGTGAAACTAACTATACCAGTTCTAAATAC
ATATATAAATACAAACCACATGCTTTAGCTCTCTATCACACACATACATCTCCTCCATCCATCACACAACAAGTAAGATAAAAAGA
AACCTTTTCACCAATGTCCAAAGACTGTGAGAAGCACGGAGGAGGCGGGGGAGGAACCGCCAGGAGAATATGCGGAGTGATCATCG
GCTTCATCATCATTGTCTTGATAACAATCTTCCTCGTCTGGGTAATCCTCCAGCCGACAAAACCAAGATTCATCCTCCAAGACGCC
ACCGTCTTCGCCTTCAACCTCACGCAACCTAACCTCCTCACCTCAAACTTCCAAGTCACGCTCGTTATACGAAACCGAAACTCCAG
GATCGGAATCTACTACGACCGTCTTCACGTCTACGCCACTTACCGGAACCAGCAAATCACTTTCCCTACGGCCATTCCACCGAGCT
ACCAAGGCCATAAAGAAGACAGTGTTTGGTCTCCTATTATCTACGGAAACGCCGTCCCCGTCGCTCCTTATAACGCCGTCGCTCTC
GGAGACGAGCAGAGTCGTGGGTTTGTTGATTTGGTTATACGCGCTGACGGGCGCGTGAGGTGGAAGGTCGGGACTCTTATTACCGG
GAAGTATCATCTTCATGTTCGTTGTCATACTTTTATCAATCTTGCGGATAAATCTAACGGAGTTATTGTCGGAGAAAATATCGTTA
AGTACACTGTGGACTACCAATGCAGTGTCGACGTTTAGATGACGGTGAAATGGGATACAGCTCTGACGCCGTTAAGTTTGCTTTTT
TTCTTTATTCACTCGTTTTTCTGCTACTCTTTGCTTCTGTATCGTTTAATTTGTCTACTTTTATCATTATCTCGTAAACTATACCA
CTCATGACATTACAGTGTCGCTAAATTATTTTAAATGAACTATAACTTACATCTCAGATAATTTTGTGG

Annotation(GO term)

GenBank top hits (Blast detail)	Score	E value
NP_181140 NDR1/HIN1-like 12 protein [Arabidopsis thaliana]	923	2e-097
XP_002879584 hypothetical protein ARALYDRAFT_482567 [Arabidopsis lyrata subsp. lyrata]	922	3e-097
XP_002876147 hypothetical protein ARALYDRAFT_485614 [Arabidopsis lyrata subsp. lyrata]	882	1e-092
BAJ34290 unnamed protein product [Thellungiella halophila]	882	1e-092
ABB36604 hairpin-induced 1-like protein NHL18B [Brassica napus]	865	1e-090

Swiss-Prot top hits (Blast detail)	Score	E value
P87179 Cell wall integrity and stress response component 1	125	4e-006

TrEMBL top hits (Blast detail)	Score	E value
Q9SJ54 At2g35960	923	2e-097
A9NI58 Hairpin-induced 1-like protein NHL18B	865	9e-091
A9NI57 Hairpin-induced 1-like protein NHL18A	858	6e-090
B6SGY4 VAMP protein SEC22	858	6e-090
Q9SVC8 Putative harpin-induced protein	836	2e-087

Arabidopsis top hits (Blast detail)	Score	E value
AT2G35960.1 NHL12	924	7e-100
AT3G52470.1 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	837	9e-090
AT4G09590.1 NHL22	791	2e-084
AT2G35970.1 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	781	3e-083
AT3G11660.1 NHL1	721	2e-076

EST library breakdown for ESTs in the assembly


8	13			16%


11	12			15%


9	11			14%


6	10			13%


10	10			13%


12	16			20%


7	7			9%

Unigene Members