Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN10496

               1      -     51
UN10496        --> AAGAACGATAGAAGAAGAAGCAACTTCAAATGAAAATTACTAATTGCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888464       <-- ..................ttttttTTCGAATGAAAATTACTAATTGCAAA
FD552023       <-- ..................................................
EX887232       <-- ..................................................
EX891427       --> AAGAACGATAGAAGAAGAAGCAACTTCAAATGAAAATTACTAATTGCAAA
EX892391       --> .........................................AATTGCAAA
EV572046       --> ..................................................
FD547856       --> ..................................................
FD934369       --> ..................................................
EX892399       --> ..................................................

               51     -    101
UN10496        --> TCACAGGGTGGGATTAAGACTAACCACACAACTAAGTAGTAGAATAATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888464       <-- TCACAGGGTGGGGTTAAGACTAACCACACAACTAAGTAGTAGAATAATAC
FD552023       <-- ..........GGATTAAGACTAACCGCACAACTAAGTAGTAGAATAATAC
EX887232       <-- ..................................................
EX891427       --> TCACAGGGTGGGATTAAGACTAACCACACAAC---GTAGTAGAATAATAC
EX892391       --> TCACAGGGGGGGGTTAAGACTAACCACACAACTAAGTAGTAGAATAATAC
EV572046       --> ........cGGGATTAAGACTAACCACACAACTAAGTAGTAGAATAATAC
FD547856       --> ..........GGATTAAGACTAACCGCACAACTAAGTAGTAGAATAATAC
FD934369       --> ..........GGATTAAGACTAACCACACAACTAAGTAGTAGAATAATAC
EX892399       --> .....................................gGTAGAATAATAC

               101    -    151
UN10496        --> AACAAGGATTAGAGATAAAACGACGCAAAGTCCCAATGCTTAAGTAGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888464       <-- AACAAGGATTAGAGATAAAACGACGCAAAGTCCCAATGCTTAAGTAGTAG
FD552023       <-- AACAAGGATTAGAGATAAAACGACGCAAAGTCCCAATGCTTAAGTAGTAG
EX887232       <-- ..................................................
EX891427       --> AACAAGGATTAGAGATAAAACGACGCAAAGTCCCAATGCTTAAGTAGTAG
EX892391       --> AACAAGGATTAGAGATAAAACGACGCAAAGTCCCAATGCTTAAGTAGTAG
EV572046       --> AACAAGGATTAGAGATAAAACGACGCAAAGTCCCAATGCTTAAGTAGTAG
FD547856       --> AACAAGGATTAGAGATAAAACGACGCAAAGTCCCAATGCTTAAGTAGTAG
FD934369       --> AACAAGGATTAGAGATAAAACGACGCAAAGTCCCAATGCTTAAGTAGTAG
EX892399       --> AACAAGGATTAGAGATAAAACGACGCAAAGTCCCAATGCTTAAGTAGTAG

               151    -    201
UN10496        --> TAGGAAATAGCAAGGATTAGAGATAAACAAAGCAACGTCCAAATGCTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888464       <-- TAGGAAATAGCAAGGATTAGAGATAAACAAAGCAACGTCCAAATGCTTTT
FD552023       <-- TAGGAAATAGCAAGGATTAGAGATAAACAAAGCAACGTCCAAATGCTTTT
EX887232       <-- ..................................................
EX891427       --> TAGGAAATAGCAAGGATTAGAGATAAACAAAGCAACGTCCAAATGCTTTT
EX892391       --> TAGGAAATAGCAAGGATTAGAGATAAACAAAGCAACGTCCAAATGCTTTT
EV572046       --> TAGGAAATAGCAAGGATTAGAGATAAACAAAGCAACGTCCAAATGCTTTT
FD547856       --> TAGGAAATAGCAAGGATTAGAGATAAACAAAGCAACGTCCAAATGCTTTT
FD934369       --> TAGGAAATAGCAAGGATTAGAGATAAACAAAGCAACGTCCAAATGCTTTT
EX892399       --> TAGGAAATAGCAAGGATTAGAGATAAACAAAGCAACGTCCAAATGCTTTT

               201    -    251
UN10496        --> AAGTAGTAGAAAACAACACGGATTATAGATACACAAACCAAAGTCTCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888464       <-- AAGTAGTAGAAAACAACACGGATTATAGATACACAAACCAAAGTCTCTCA
FD552023       <-- AAGTAGTAGAAAACAACACGGATTATAGATACACAAACCAAAGTCTCACC
EX887232       <-- ..................................................
EX891427       --> AAGTAGTAGAAAACAACACGGATTATAGATACACAAACCAAAGTCTCTCA
EX892391       --> AAGTAGTAAAAAACAACACGGATTATAGATACACAAACCAAAGTCTCTCA
EV572046       --> AAGTAGTAGAAAACAACACGGATTATAGATACACAAACCAAAGTCTCTCA
FD547856       --> AAGTAGTAGAAAACAACACGGATTATAGATACACAAACCAAAGTCTCACC
FD934369       --> AAGTAGTAGAAAACAACACGGATTATAGATACACAAACCAAAGTCTCTCA
EX892399       --> AAGTAGTAGAAAACAACACGGATTATAGATACACAAACCAAAGTCTCTCA

               251    -    301
UN10496        --> CCCCTAGGCTTCAGCGTTGACAACAGCACTCGACATTTGCTGAGAAGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888464       <-- CCCCTAGGCTTCAGCGTTGACAACAGCACTCGACATTTGCTGAGAAGATG
FD552023       <-- ACCCTAGGCTTCAGCGTTGACAACAGCACTCGACATTTGCTGAGAAGATG
EX887232       <-- .....AGGCTTCAGCGTTGACAACAGCACTCGACATTTGCTGAGAAGATG
EX891427       --> CCCCTAGGCTTCAGCGTTGACAACAGCACTCGACATTTGCTGAGAAGATG
EX892391       --> CCCCTAGGCTTCAGCGTTGACAACAGCACTCGACATTTGCTGAGAAGATG
EV572046       --> CCCCTAGGCTTCAGCGTTGACAACAGCACTCGACATTTGCTGAGAAGATG
FD547856       --> ACCCTAGGCTTCAGCGTTGACAACAGCACTCGACATTTGCTGAGAAGATG
FD934369       --> CCCCTAGGCTTCAGCGTTGACAACAGCACTCGACATTTGCTGAGAAGATG
EX892399       --> CCCCTAGGCTTCAGCGTTGACAACAGCACTCGACATTTGCTGAGAAGATG

               301    -    351
UN10496        --> CTGCTTCACTCTCAAGAAGCCACTCCCTGGCGCAAATCAGAGCCTCCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888464       <-- CTGCTTCACTCTCAAGAAGCCACTCCCTGGCGCAAATCAGAGCCTCCACA
FD552023       <-- CTGCTTCACTCTCAAGAAGCCACTCCCTGGCGCAAATCAGAGCCTCCACA
EX887232       <-- CTGCTTCACTCTCAAGAAGCCACTCCCTGGCGCAAATCAGAGCCTCCACA
EX891427       --> CTGCTTCACTCTCAAGAAGCCACTCCCTGGCGCAAATCAGAGCCTCCACA
EX892391       --> CTGCTTCACTCTCAAGAAGCCACTCCCTGGCGCAAATCAAAGCCTCCACA
EV572046       --> CTGCTTCACTCTCAAGAAGCCACTCCCTGGCGCAAATCAAAGCCTCCACA
FD547856       --> CTGCTTCACTCTCAAGAAGCCACTCCCTGGCGCAAATCAGAGCCTCCACA
FD934369       --> CTGCTTCACTCTCAAGAAGCCACTCCCTGGCGCAAATCAGAGCCTCCACA
EX892399       --> CTGCTTCACTCTCAAGAAGCCACTCCCTGGCGCAAATCAGAGCCTCCACA

               351    -    401
UN10496        --> GTCTCAGGCCTCAGAGACGTCTTGTACTCATCCATCTCCCTCGGTTCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888464       <-- GTCTCAGGCCTCAGAGACGTCTTGTACTCATCCATCTCCCTCGGTTCCAT
FD552023       <-- GTCTCAGGCCTCAGCGTCGTCTTGTACTCATCCATCTCCCTCGGTTCCAT
EX887232       <-- GTCTCAGGCCTCAGAGACGTCTTGTACTCATCCATCTCCCTCGGTTCCAT
EX891427       --> GTCTCAGGCCTCAGAGACGTCTTGTACTCATCCATCTCCCTCGGTTCCAT
EX892391       --> GTCTCAGGCCTCAAAAACGTCTTGTACTCATCCATCTCCCTCGGTTCCAT
EV572046       --> GTCTCAGGCCTCAGAGACGTCTTGTACTCATCCATCTCCCTCGGTTCCAT
FD547856       --> GTCTCAGGCCTCAGCGTCGTCTTGTACTCATCCATCTCCCTCGGTTCCAT
FD934369       --> GTCTCAGGCCTCAGAAACGTCTTGTACTCATCCATCTCCCTCGGTTCCAT
EX892399       --> GTCTCAGGCCTCAGAGACGTCTTGTACTCATCCATCTCCCTCGGTTCCAT

               401    -    451
UN10496        --> GTCAAACACATAGTCGAAGGCTGCAGCTGAAACCGGGATGGAGAGGATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888464       <-- GTCAAACACATAGTCGAAGGCTGCAGCTGAGACCGGGATGGAGAGGATGT
FD552023       <-- GTCAAACACATAGTCGAAGGCCGCAGCTGAGACCGGGATGGAGAGGATGT
EX887232       <-- GTCAAACACATAGTCGAAGGCTGCAGCTGAGACCGGGATGGAGAGGATGT
EX891427       --> GTCAAACACATAGTCGAAGGCTGCAGCTGAAACCGGGATGGAGAGGATGT
EX892391       --> GTCAAACACATAGTCAAAGGCTGCAGCTGAAACCGGGATGGAGAGGATGT
EV572046       --> GTCAAACACATAGTCGAAGGCTGCAGCTGAAACCGGGATGGAGAGGATGT
FD547856       --> GTCAAACACATAGTCGAAGGCCGCAGCTGAAACCGGGATGGAGAGGATGT
FD934369       --> GTCAAACACATAGTCGAAGGCTGCAGCTGAAACCGGGATGGAGAGGATGT
EX892399       --> GTCAAACACATAGTCGAAGGCTGCAGCTGAAACGGGGATGGAGAGGATGT

               451    -    501
UN10496        --> CTCTAGCCATCTTGCACAGTGTCGGGTACTTGAGCTTGTTCTGTTTCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888464       <-- CTCTAGCCATCTTGCACAGTGTCGGGTACTTGAGCTTGTTCTGTTTCCAC
FD552023       <-- CTCTAGCCATCTTGCACAGTGTCGGGTACTTGAGCTTATTCTGTTTCCAC
EX887232       <-- CTCTAGCCATCTTGCACAGTGTCGGGTACTTGAGCTTGTTCTGTTTCCAC
EX891427       --> CTCTAGCCATCTTGCACAGTGTCGGGTACTTGAGCTTGTTCTGTTTCCAC
EX892391       --> CTCTAGCCATCTTGCACAGTGTCGGGTACTTGAGCTTGTTCTGTTTCCAC
EV572046       --> CTCTAGCCATCTTGCACAGTGTCGGGTACTTGAGCTTGTTCTGTTTCCAC
FD547856       --> CTCTAGCCATCTTGCACAGTGTCGGGTACTTGAGCTTATTCTGTTTCCAC
FD934369       --> CTCTAGCCATCTTGCACAGTGTCGGGTACTTGAGCTTGTTCTGTTTCCAC
EX892399       --> CTCTAGCCATCTTGCACAGTGTCGGGTACTTGAGCTTGTTCTGTTTCCAC

               501    -    551
UN10496        --> CAGTCTAAAACATCAAACTCCTGAACACGAGGAAGCAGCGTTTCGTCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888464       <-- CAGTCTAAAACATCAAACTCCTGAACACGAGGAAGCAGCGTTTCGTCAAG
FD552023       <-- CAGTCTAGAACATCAAACTCCTGAACACGAGGAAGCAGCGTTTCGTCAAG
EX887232       <-- CAGTCTAAAACATCAAACTCCTGAACACGAGGAAGCAGCGTTTCGTCAAG
EX891427       --> CAGTCTAAAACATCAAACTCCTGAACACGAGGAAGCAGCGTTTCGTCAAG
EX892391       --> CAGTCTAAAACATCAAACTCCTGAACACGAGGAAGCAGCGTTTCGTCAAG
EV572046       --> CAGTCGAGAACATCAAACTCCTGAACACGAGGAAGCAGCGTTTCGTCAAG
FD547856       --> CAGTCTAGAACATCAAACTCCTGAACACGAGGAAGCAGCGTTTCGTCAAG
FD934369       --> CAGTCTAAAACATCAAACTCCTGAACACGAGGAAGCCGCGTTTCGTCAAG
EX892399       --> CAGTCTAAAACATCAAACTCCTGAACACGAGGAAGCAGCGTTTCGTCAAG

               551    -    601
UN10496        --> GTACTGGTCCAGCTCTGACTTGAGGTTCTGCCCTGTTGTCTCCAGTATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888464       <-- GTACTGGTCCAGCTCTGACTTGAGGTTCTGCCCTGTTGTCTCCAATATGT
FD552023       <-- GTACTGGTCCAGCTCTGACTTGAGGTTCTGCCCTGTTGTCTCCAGAATAT
EX887232       <-- GTACTGGTCCAGCTCTGACTTGAGGTTCTGCCCTGTTGTCTCCAGTATGT
EX891427       --> GTACTGGTCCAGCTCTGACTTGAGGTTCTGCCCTGTTGTCTCCAGTATGT
EX892391       --> GTACTGGTCCAGCTCTGACTTGAGGTTCTGCCCTGTTGTCTCCAATATGT
EV572046       --> GTACTGGTCCAGCTCTGACTTGAGGTTCTGCCCTGTTGTCTCCAGTATGT
FD547856       --> GTACTGGTCCAGCTCTGACTTGAGGTTCTGCCCTGTTGTCTCCAGAATAT
FD934369       --> GTACTGGTCCAGCTCTGACTTGAGGTTCTGCCCTGTTGTCTCCAGTATGT
EX892399       --> GTACTGGTCCAGCTCTGACTTGAGGTTCTGCCCTGTTGTCTCCAGTATGT

               601    -    651
UN10496        --> AGTTGTCGAAATCAGACAGCCCGTCTGCCTCGGATGCTGGTTTTAGCGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888464       <-- AGTTGTCGAAATCAGACAGCCCGTCTGCCTCGGATGCTGGTTTTAGCGGT
FD552023       <-- AGTTGTCGAAATCAGACAGCCCGTCTGCCTCGGATGCTGGTTTTAACGGT
EX887232       <-- AGTTGTCGAAATCAGACAGCCCGTCTGCCTCGGATGCTGGTTTTAGCGGT
EX891427       --> AGTTGTCGAAATCAGACAGCCCGTCTGCCTCGGATGCTGGTTTTAGCGGT
EX892391       --> AGTTGTCGAAATCAGACAGCCCGTCTGCCTCGGATGCTGGTTTTAGCGGT
EV572046       --> AGTTGTCGAAATCAGACAGCCCGTCTGCCTCGGATGCTGGCTTTAGCGGT
FD547856       --> AGTTGTCGAAATCAGACAGCCCGTCTGCCTCGGATGCTGGTTTTAACGGT
FD934369       --> AGTTGTCGAAATCAGACAGCCCGTCTGCCTCGGATGCTGGTTTTAGCGGT
EX892399       --> AGTTGTCGAAATCAGACAGCCCGTCTGCCTCGGATGCTGGTTTTAGCGGT

               651    -    701
UN10496        --> GCAGGGAGTGCCATGTACTCGTTGAAGAGCTCGTGGATCCCATCATCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888464       <-- GCGGGGAGTGCCATGTAC................................  Raphanus sativus var. oleiformis
FD552023       <-- GCAGGGAGTGCCATGTACTCGTTGAAGAGCTCGTGGATCCCATCGTCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX887232       <-- GCAGGGAGTGCCATGTACTCGTTGAAGAGCTCGTGGATCCCATCATCAAC  Raphanus sativus var. oleiformis
EX891427       --> GCAGGGAGTGCCATGTACTCGTTGAAGAGCTCGTGGATCCCATCATCAAC  Raphanus sativus var. oleiformis
EX892391       --> GCGGGGAGTGCCATGTAC................................  Raphanus sativus var. oleiformis
EV572046       --> GCAGGGAGTGCCATGTACTCGTTGAAGAGCTCGTGGATCCCATCGTCCAC  Raphanus raphanistrum subsp. landra
FD547856       --> GCAGGGAGTGCCATGTACTCGTTGAAGAGCTCGTGGATCCCATCGTCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD934369       --> GCAGGGAGTGCTATGTACTCGTTGAAGAGCTCGTGGATCCCATCATCAAC  Raphanus sativus var. oleiformis
EX892399       --> GCAGGGAGTGCCATGTACTCGTTGAAGAGCTCGTGGATCCCATCATCAAC  Raphanus sativus var. oleiformis

               701    -    751
UN10496        --> GGTCTTGATGTTCTTCCCAGCGTCTTCTCCGAATATCTTGGAGAAGCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888464       <-- ..................................................
FD552023       <-- GGTCTTGATGTTCTTCCCAGCGTCTTCTCCGAATATCTTGGAGAAGCTGA
EX887232       <-- GGTCTTGATGTTCTTCCCAGCGTCTTCTCCGAATATCTTGGAGAAGCTGA
EX891427       --> GGTCTTGATGTTCTTCCCAGCGTCTTCTCCGAATATCTTGGAGAAGCTGA
EX892391       --> ..................................................
EV572046       --> GGTCTTGATGTTCTTCCCAGCGTCTTCTCCGAATATCTTGGAGAAGCTGA
FD547856       --> GGTCTTGATGTTCTTCCCAGCGTCTTCTCCGAATATCTTGGAGAAGCTGA
FD934369       --> GGTCTTGATGTTCTTCCCAGC.............................
EX892399       --> GGTCTTGATGTTCTTCCCAGCGTCTTCTCCGAATATCTTGGAGAAGCTGA

               751    -    801
UN10496        --> ACTCCACCAGCTTCATCTTGAACCGAGGATCCATCACAACCGCCATCGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888464       <-- ..................................................
FD552023       <-- ACTCCACTAGCTTCATCTTGAACCGAGGc.....................
EX887232       <-- ACTCCACCAGCTTCATCTTGAACCGAGGATCCATCACAACCGCCATCGCC
EX891427       --> ACTCCACCAGCTTCATCTTGAACCGAGGATCCATCACAACCGCCATCGCC
EX892391       --> ..................................................
EV572046       --> ACTCCACCAGCTTCATCTTGAACCGAGGATCCATCACAACCGCCATCGCC
FD547856       --> ACTCCACt..........................................
FD934369       --> ..................................................
EX892399       --> ACTCCACCAGCTTCATCTTGAACCGAGGATCCATCACAACCGCCATCGCC

               801    -    851
UN10496        --> AGAACCAAGCTACACTCCCTCCAGTACTTGTCAACCTTCTCCTTCATGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888464       <-- ..................................................
FD552023       <-- ..................................................
EX887232       <-- AGAACCAAGCTACACTCCCTCCAGTACTTGTCAACCTTCTCCTTCATGGT
EX891427       --> AGAACCAAGCTACACTCCCTCCAGTACTTGTCA.................
EX892391       --> ..................................................
EV572046       --> AAGACCAAGCTACACTCCCTCCAGTACTTGTCAACCTTCTCCTTCGTGG.
FD547856       --> ..................................................
FD934369       --> ..................................................
EX892399       --> AGAACCAAGCTACACTCCCTCCAGTACTTGTCAACCTTC...........

               851    -    901
UN10496        --> TTTAGCTATGCCAGCTACATAAGGATCCTCTCCCGCTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888464       <-- ........................................
FD552023       <-- ........................................
EX887232       <-- TTTAGCTATGCCAGCTACATAAGGATCCTCTCCCGCTATC
EX891427       --> ........................................
EX892391       --> ........................................
EV572046       --> ........................................
FD547856       --> ........................................
FD934369       --> ........................................
EX892399       --> ........................................