BLASTX 7.6.2
Query= UN23016 /QuerySize=4077
(4076 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|262400792|gb|ACY66281.1| RNA polymerase alpha subunit [Brassi... 655 2e-185
gi|139388126|ref|YP_001123318.1| RNA polymerase alpha subunit [B... 650 9e-184
gi|139389128|ref|YP_001123846.1| RNA polymerase alpha subunit [N... 650 9e-184
gi|139388942|ref|YP_001123669.1| RNA polymerase alpha subunit [L... 646 1e-182
gi|139390184|ref|YP_001123757.1| RNA polymerase alpha subunit [L... 643 1e-181
gi|139389450|ref|YP_001123147.1| RNA polymerase alpha subunit [O... 642 1e-181
gi|139387284|ref|YP_001123405.1| RNA polymerase alpha subunit [C... 642 1e-181
gi|7388101|sp|Q9XQN8.1|RPOA_SINAL RecName: Full=DNA-directed RNA... 641 3e-181
gi|139389982|ref|YP_001123582.1| RNA polymerase alpha subunit [D... 640 7e-181
gi|139389833|ref|YP_001123494.1| RNA polymerase alpha subunit [C... 638 3e-180
gi|297837931|ref|XP_002886847.1| RNA polymerase alpha subunit [A... 637 6e-180
gi|139389674|ref|YP_001123231.1| RNA polymerase alpha subunit [A... 633 1e-178
gi|139390380|ref|YP_001122978.1| RNA polymerase alpha subunit [A... 619 2e-174
gi|139389296|ref|YP_001123062.1| RNA polymerase alpha subunit [A... 616 2e-173
gi|167391838|ref|YP_001671715.1| RNA polymerase alpha subunit [C... 587 9e-165
gi|313199734|ref|YP_004021348.1| RNA polymerase alpha subunit [T... 575 2e-161
gi|290489690|gb|ADD31229.1| RNA polymerase alpha subunit protein... 564 5e-158
gi|91208933|ref|YP_538968.1| RNA polymerase alpha subunit [Gossy... 564 8e-158
gi|290489678|gb|ADD31223.1| RNA polymerase alpha subunit protein... 563 1e-157
gi|194132131|gb|ACF33385.1| RNA polymerase alpha subunit [Gonyst... 560 7e-157
>gi|262400792|gb|ACY66281.1| RNA polymerase alpha subunit [Brassica napus]
Length = 327
Score = 655 bits (1689), Expect = 2e-185
Identities = 325/327 (99%)
Frame = -3
Query: 2370 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 2191
MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 2190 CITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 2011
CITRAK ENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD
Sbjct: 61 CITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 120
Query: 2010 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 1831
IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ
Sbjct: 121 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 180
Query: 1830 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 1651
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 240
Query: 1650 NNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 1471
NNQHQVTLPLFPFHNRLVNLRKKKKEL FQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN
Sbjct: 241 NNQHQVTLPLFPFHNRLVNLRKKKKELAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 300
Query: 1470 NSQEDLIKMEHFHIEDVKKILDILEKK 1390
NSQEDLIKMEHFHIEDVKKILDILEKK
Sbjct: 301 NSQEDLIKMEHFHIEDVKKILDILEKK 327
>gi|139388126|ref|YP_001123318.1| RNA polymerase alpha subunit [Barbarea verna]
Length = 327
Score = 650 bits (1675), Expect = 9e-184
Identities = 320/327 (97%), Positives = 325/327 (99%)
Frame = -3
Query: 2370 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 2191
MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 2190 CITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 2011
CITRAK ENIPHDYSNIVGIQESVHEILMNLNEIVL+SNLYGTRNALICVQGPGYITARD
Sbjct: 61 CITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARD 120
Query: 2010 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 1831
I+LPPSVEI+DNTQHIATLTEPI+LCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ
Sbjct: 121 IILPPSVEIIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 180
Query: 1830 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 1651
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 240
Query: 1650 NNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 1471
NNQHQVTLPLFPFHNRLVNLRKKKKE GFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN
Sbjct: 241 NNQHQVTLPLFPFHNRLVNLRKKKKEQGFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 300
Query: 1470 NSQEDLIKMEHFHIEDVKKILDILEKK 1390
NSQEDLIK+EHFHIEDVKKILDILEKK
Sbjct: 301 NSQEDLIKIEHFHIEDVKKILDILEKK 327
>gi|139389128|ref|YP_001123846.1| RNA polymerase alpha subunit [Nasturtium
officinale]
Length = 327
Score = 650 bits (1675), Expect = 9e-184
Identities = 320/327 (97%), Positives = 325/327 (99%)
Frame = -3
Query: 2370 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 2191
MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 2190 CITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 2011
CITRAK ENIPHDYSNIVGIQESVHEILMNLNEIVL+SNLYGTRNALICVQGPGYITARD
Sbjct: 61 CITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARD 120
Query: 2010 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 1831
I+LPPSVEI+DNTQHIATLTEPI+LCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ
Sbjct: 121 IILPPSVEIIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 180
Query: 1830 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 1651
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 240
Query: 1650 NNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 1471
NNQHQVTLPLFPFHNRLVNLRKKKKEL FQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN
Sbjct: 241 NNQHQVTLPLFPFHNRLVNLRKKKKELAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 300
Query: 1470 NSQEDLIKMEHFHIEDVKKILDILEKK 1390
NSQEDLIK+EHFHIEDVKKILDILEKK
Sbjct: 301 NSQEDLIKIEHFHIEDVKKILDILEKK 327
>gi|139388942|ref|YP_001123669.1| RNA polymerase alpha subunit [Lepidium
virginicum]
Length = 327
Score = 646 bits (1665), Expect = 1e-182
Identities = 318/327 (97%), Positives = 324/327 (99%)
Frame = -3
Query: 2370 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 2191
MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 2190 CITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 2011
CITRAK ENIPHDYSNIVGIQESVHEILMNLNEIVL+SNLYGTRNALICVQGPGYITA+D
Sbjct: 61 CITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAQD 120
Query: 2010 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 1831
I+LPPSVEI+DNTQHIATL EPI+LCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ
Sbjct: 121 IILPPSVEIIDNTQHIATLMEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 180
Query: 1830 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 1651
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 240
Query: 1650 NNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 1471
NNQHQVTLPLFPFHNRLVNLRKKKKEL FQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN
Sbjct: 241 NNQHQVTLPLFPFHNRLVNLRKKKKELAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 300
Query: 1470 NSQEDLIKMEHFHIEDVKKILDILEKK 1390
NSQEDLIK+EHFHIEDVKKILDILEKK
Sbjct: 301 NSQEDLIKIEHFHIEDVKKILDILEKK 327
>gi|139390184|ref|YP_001123757.1| RNA polymerase alpha subunit [Lobularia
maritima]
Length = 327
Score = 643 bits (1657), Expect = 1e-181
Identities = 316/327 (96%), Positives = 324/327 (99%)
Frame = -3
Query: 2370 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 2191
MVREKVKVSTRTLQWKCVESR+DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRKDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 2190 CITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 2011
CITRAK ENIPHDYSNIVGIQESVHEILMNLNEIVL+SNLYGTRNALICVQGPGYITA+D
Sbjct: 61 CITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAQD 120
Query: 2010 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 1831
I+LPPSVEI+DNTQHIATLTEPI+LCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ
Sbjct: 121 IILPPSVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 180
Query: 1830 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 1651
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 240
Query: 1650 NNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 1471
NNQHQVTLPLFPFHNRLVNLRKKKKEL FQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN
Sbjct: 241 NNQHQVTLPLFPFHNRLVNLRKKKKELAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 300
Query: 1470 NSQEDLIKMEHFHIEDVKKILDILEKK 1390
NSQEDLIK+EHFH+EDVKKILDILEKK
Sbjct: 301 NSQEDLIKIEHFHMEDVKKILDILEKK 327
>gi|139389450|ref|YP_001123147.1| RNA polymerase alpha subunit [Olimarabidopsis
pumila]
Length = 327
Score = 642 bits (1656), Expect = 1e-181
Identities = 317/327 (96%), Positives = 322/327 (98%)
Frame = -3
Query: 2370 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 2191
MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 2190 CITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 2011
CITRAK ENIPHDYSNIVGIQESVHEILMNLNEIVL+SNLYGTRNALICVQGPGYITARD
Sbjct: 61 CITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARD 120
Query: 2010 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 1831
I+LPPSVEI+DNTQHIATLTEPI+LCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ
Sbjct: 121 IILPPSVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 180
Query: 1830 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 1651
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEET YLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETVYLE 240
Query: 1650 NNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 1471
NNQHQVTLP FPFHNRLVNLRKKKKEL FQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN
Sbjct: 241 NNQHQVTLPFFPFHNRLVNLRKKKKELAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 300
Query: 1470 NSQEDLIKMEHFHIEDVKKILDILEKK 1390
NSQEDLIK+EHFHIEDVKKILDILEKK
Sbjct: 301 NSQEDLIKIEHFHIEDVKKILDILEKK 327
>gi|139387284|ref|YP_001123405.1| RNA polymerase alpha subunit [Capsella
bursa-pastoris]
Length = 327
Score = 642 bits (1656), Expect = 1e-181
Identities = 316/327 (96%), Positives = 322/327 (98%)
Frame = -3
Query: 2370 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 2191
MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 2190 CITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 2011
CITRAK ENIPHDYSNIVGIQESVHEILMNLNEIVL+SNLYGTRNALICVQGPGYITARD
Sbjct: 61 CITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARD 120
Query: 2010 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 1831
I+LPPSVEI+DNTQHIATLTEPI+LCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ
Sbjct: 121 IILPPSVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 180
Query: 1830 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 1651
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 240
Query: 1650 NNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 1471
NNQHQVTLP FPFHNRLVNLRKK KEL FQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN
Sbjct: 241 NNQHQVTLPFFPFHNRLVNLRKKTKELAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 300
Query: 1470 NSQEDLIKMEHFHIEDVKKILDILEKK 1390
NSQEDLIK+EHFH+EDVKKILDILEKK
Sbjct: 301 NSQEDLIKIEHFHVEDVKKILDILEKK 327
>gi|7388101|sp|Q9XQN8.1|RPOA_SINAL RecName: Full=DNA-directed RNA polymerase
subunit alpha; Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
Length = 327
Score = 641 bits (1653), Expect = 3e-181
Identities = 315/327 (96%), Positives = 322/327 (98%)
Frame = -3
Query: 2370 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 2191
MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAM RALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMARALLGEIEGT 60
Query: 2190 CITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 2011
CITRAK ENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRN ICVQGPGYITARD
Sbjct: 61 CITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNPFICVQGPGYITARD 120
Query: 2010 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 1831
I+LPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ
Sbjct: 121 IILPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 180
Query: 1830 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 1651
NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEAL+EASRNLINLFIPFLHVEEETFYLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLINLFIPFLHVEEETFYLE 240
Query: 1650 NNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 1471
NNQHQVTLP+FPFHN+LVNLR+KKKEL FQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN
Sbjct: 241 NNQHQVTLPVFPFHNKLVNLRQKKKELAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 300
Query: 1470 NSQEDLIKMEHFHIEDVKKILDILEKK 1390
NSQEDLIKMEHFHIEDVKK+LDILEKK
Sbjct: 301 NSQEDLIKMEHFHIEDVKKLLDILEKK 327
>gi|139389982|ref|YP_001123582.1| RNA polymerase alpha subunit [Draba nemorosa]
Length = 327
Score = 640 bits (1650), Expect = 7e-181
Identities = 316/327 (96%), Positives = 323/327 (98%)
Frame = -3
Query: 2370 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 2191
MVREKVKVSTRTLQW+CVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWRCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 2190 CITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 2011
CITRAK ENIPHDYSNIVGIQESVHEILMNLNEIVL+SNLYGTRNALICVQGPGYITARD
Sbjct: 61 CITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARD 120
Query: 2010 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 1831
I+LPPSVEIVDNTQHIAT+TE I+LCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ
Sbjct: 121 IILPPSVEIVDNTQHIATVTESIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 180
Query: 1830 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 1651
NANHSIHSYGNGN KQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETF+LE
Sbjct: 181 NANHSIHSYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFHLE 240
Query: 1650 NNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 1471
NNQHQVTLPLFPFHNRLVNLRKKKKEL FQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN
Sbjct: 241 NNQHQVTLPLFPFHNRLVNLRKKKKELAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 300
Query: 1470 NSQEDLIKMEHFHIEDVKKILDILEKK 1390
NSQEDLIK+EHFHIEDVKKILDILEKK
Sbjct: 301 NSQEDLIKIEHFHIEDVKKILDILEKK 327
>gi|139389833|ref|YP_001123494.1| RNA polymerase alpha subunit [Crucihimalaya
wallichii]
Length = 327
Score = 638 bits (1645), Expect = 3e-180
Identities = 313/327 (95%), Positives = 320/327 (97%)
Frame = -3
Query: 2370 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 2191
MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 60
Query: 2190 CITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 2011
CITR K ENIPHDYSNIVGIQESVHEILMNLNEIVL+SNLYGTRNALICVQGPGYITARD
Sbjct: 61 CITRVKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARD 120
Query: 2010 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 1831
I+LPPSVEIVDNTQHIATLTEPI+LCIGLKIERNRGYSLK+SNN EDRSYPIDAVFMPVQ
Sbjct: 121 IILPPSVEIVDNTQHIATLTEPIDLCIGLKIERNRGYSLKISNNLEDRSYPIDAVFMPVQ 180
Query: 1830 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 1651
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 240
Query: 1650 NNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 1471
NNQHQVTLP FPFHNR NLRKKKKEL FQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN
Sbjct: 241 NNQHQVTLPFFPFHNRFFNLRKKKKELAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 300
Query: 1470 NSQEDLIKMEHFHIEDVKKILDILEKK 1390
NSQEDLIK+EHFH+EDVKKILDILEKK
Sbjct: 301 NSQEDLIKIEHFHVEDVKKILDILEKK 327
>gi|297837931|ref|XP_002886847.1| RNA polymerase alpha subunit [Arabidopsis
lyrata subsp. lyrata]
Length = 327
Score = 637 bits (1642), Expect = 6e-180
Identities = 313/327 (95%), Positives = 321/327 (98%)
Frame = -3
Query: 2370 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 2191
MVREKVKVSTRTLQWKCVES+RDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESKRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 2190 CITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 2011
CITRAK ENIPHDYSNIVGIQESVHEILMNLNEIVL+SNLYGTRNALICVQGPGYITARD
Sbjct: 61 CITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARD 120
Query: 2010 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 1831
I+LPPSVEI+DNTQHIATLTE I+LCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+
Sbjct: 121 IILPPSVEIIDNTQHIATLTETIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVE 180
Query: 1830 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 1651
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 240
Query: 1650 NNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 1471
NNQHQVTLP FPFHNRLVNLRKK KEL FQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN
Sbjct: 241 NNQHQVTLPFFPFHNRLVNLRKKTKELAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 300
Query: 1470 NSQEDLIKMEHFHIEDVKKILDILEKK 1390
NSQEDLIK+EHFH+EDVKKILDILEKK
Sbjct: 301 NSQEDLIKIEHFHVEDVKKILDILEKK 327
>gi|139389674|ref|YP_001123231.1| RNA polymerase alpha subunit [Arabis hirsuta]
Length = 337
Score = 633 bits (1631), Expect = 1e-178
Identities = 312/330 (94%), Positives = 321/330 (97%)
Frame = -3
Query: 2370 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 2191
MVREKVKVSTRTLQW+CVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWRCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 2190 CITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 2011
CITRAK ENIPHDYSNIVGIQESVHEILMNLNEIVL+SNLYG RNA+ICVQGPGYITARD
Sbjct: 61 CITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGARNAIICVQGPGYITARD 120
Query: 2010 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 1831
I+LPPSVEI+DNTQHIATLTE I+LCIGLKIERNRGYSLK+ N FEDRSYPIDAVFMPVQ
Sbjct: 121 IILPPSVEIIDNTQHIATLTESIDLCIGLKIERNRGYSLKILNTFEDRSYPIDAVFMPVQ 180
Query: 1830 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 1651
NANHSIHSYGNGN KQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE
Sbjct: 181 NANHSIHSYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 240
Query: 1650 NNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 1471
NNQH VTLPLFPFHNRLVNLRKKKKEL FQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN
Sbjct: 241 NNQHHVTLPLFPFHNRLVNLRKKKKELAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 300
Query: 1470 NSQEDLIKMEHFHIEDVKKILDILEKK*KK 1381
NSQEDLIK+EHFHIEDVKKILDILEKK +K
Sbjct: 301 NSQEDLIKIEHFHIEDVKKILDILEKKIEK 330
>gi|139390380|ref|YP_001122978.1| RNA polymerase alpha subunit [Aethionema
cordifolium]
Length = 333
Score = 619 bits (1595), Expect = 2e-174
Identities = 306/329 (93%), Positives = 318/329 (96%)
Frame = -3
Query: 2370 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 2191
MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 60
Query: 2190 CITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 2011
CITRAK ENIPHDYSNIVGIQESVHEILMNL EIVL+SNLYGT NALICVQGPG ITARD
Sbjct: 61 CITRAKSENIPHDYSNIVGIQESVHEILMNLQEIVLRSNLYGTCNALICVQGPGSITARD 120
Query: 2010 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 1831
I+LPPSVEI+DNTQHIATLTEPI+LCIGL+IERNRGYSLKM N+FED SYPIDA+FMPVQ
Sbjct: 121 IILPPSVEIIDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNHFEDGSYPIDALFMPVQ 180
Query: 1830 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 1651
NANHSIHSYG GNEKQEILFLEIWTNG+LTPKEALHEASRNLINLFIPFLHVEEETFYLE
Sbjct: 181 NANHSIHSYGTGNEKQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLE 240
Query: 1650 NNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 1471
NNQH+VTLPLFPFHNRLV LRKKKKEL FQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN
Sbjct: 241 NNQHKVTLPLFPFHNRLVKLRKKKKELVFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 300
Query: 1470 NSQEDLIKMEHFHIEDVKKILDILEKK*K 1384
NSQEDLIK+EHFHIEDVKKIL+ILEK K
Sbjct: 301 NSQEDLIKIEHFHIEDVKKILEILEKNRK 329
>gi|139389296|ref|YP_001123062.1| RNA polymerase alpha subunit [Aethionema
grandiflorum]
Length = 333
Score = 616 bits (1586), Expect = 2e-173
Identities = 305/329 (92%), Positives = 316/329 (96%)
Frame = -3
Query: 2370 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 2191
MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 60
Query: 2190 CITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 2011
CITRAK ENIPHDYSNIVGIQESVHEILMNL EIVL+SNLYGT NALICVQGPGYITARD
Sbjct: 61 CITRAKSENIPHDYSNIVGIQESVHEILMNLQEIVLRSNLYGTCNALICVQGPGYITARD 120
Query: 2010 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 1831
I+LPPSVEI+DNTQHIATLTEPI+LCIGL+IERNRGYSLKM N FED SYPIDA+FMPVQ
Sbjct: 121 IILPPSVEIMDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNPFEDGSYPIDALFMPVQ 180
Query: 1830 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 1651
NANHSIHSYG GNE QEILFLEIWTNG+LTPKEALHEASRNLINLFIPFLHVEEETFYLE
Sbjct: 181 NANHSIHSYGTGNENQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLE 240
Query: 1650 NNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 1471
NN+ +VTLPLFPFHNRLV LRKKKKEL FQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN
Sbjct: 241 NNEDKVTLPLFPFHNRLVKLRKKKKELVFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 300
Query: 1470 NSQEDLIKMEHFHIEDVKKILDILEKK*K 1384
NSQEDLIK+EHFHIEDVKKILDILEK K
Sbjct: 301 NSQEDLIKIEHFHIEDVKKILDILEKNRK 329
>gi|167391838|ref|YP_001671715.1| RNA polymerase alpha subunit [Carica papaya]
Length = 327
Score = 587 bits (1511), Expect = 9e-165
Identities = 288/327 (88%), Positives = 305/327 (93%)
Frame = -3
Query: 2370 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 2191
MVREKVKVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 2190 CITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 2011
CITRAK E IPH+YS IVGIQESVHEILMNL EIVL+SNLYGTR+A ICV+GPGY+TA+D
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAFICVKGPGYVTAQD 120
Query: 2010 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 1831
IVLPPSVEIVDNTQHIA+LTEPI+L IGL+IERNRGY +K NNF+D SYPIDAVFMPVQ
Sbjct: 121 IVLPPSVEIVDNTQHIASLTEPIDLRIGLQIERNRGYGIKTPNNFQDGSYPIDAVFMPVQ 180
Query: 1830 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 1651
NANHSIHSYG GNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLH EEE FYLE
Sbjct: 181 NANHSIHSYGTGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEEKFYLE 240
Query: 1650 NNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 1471
NNQH+VTLP FPFH+RL LRKKK E+ FQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN
Sbjct: 241 NNQHKVTLPFFPFHDRLAKLRKKKTEIAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 300
Query: 1470 NSQEDLIKMEHFHIEDVKKILDILEKK 1390
NSQEDL+K+EHF EDVK+IL ILEKK
Sbjct: 301 NSQEDLMKIEHFRTEDVKQILSILEKK 327
>gi|313199734|ref|YP_004021348.1| RNA polymerase alpha subunit [Theobroma
cacao]
Length = 327
Score = 575 bits (1482), Expect = 2e-161
Identities = 280/327 (85%), Positives = 301/327 (92%)
Frame = -3
Query: 2370 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 2191
MVREKVKVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 2190 CITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 2011
CITRAK E IPH+YS IVGIQESVHEILMNL EIVL+SNLYGTRNA IC +GPGY+TA+D
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNAFICAKGPGYVTAQD 120
Query: 2010 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 1831
I+LPPSVEIVDNTQHIA+LTEPI+LCIGL+IERNRGY +K NNF D SYP+DAVFMPV+
Sbjct: 121 IILPPSVEIVDNTQHIASLTEPIDLCIGLQIERNRGYRIKTPNNFHDGSYPLDAVFMPVR 180
Query: 1830 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 1651
NANHSIH YGN NEKQEILFLEIWTNGSLTPKEALHEASRNLI+LFIPFLH EEE +LE
Sbjct: 181 NANHSIHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 1650 NNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 1471
NNQH VTLP FPFH+RL LRKKKKE+ +YIFIDQ ELPPRIYNCLKKSNIHTLLDLLN
Sbjct: 241 NNQHNVTLPFFPFHDRLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKKSNIHTLLDLLN 300
Query: 1470 NSQEDLIKMEHFHIEDVKKILDILEKK 1390
NSQEDL+K+EHF IEDVK+IL ILEK+
Sbjct: 301 NSQEDLMKIEHFRIEDVKQILGILEKE 327
>gi|290489690|gb|ADD31229.1| RNA polymerase alpha subunit protein [Heuchera
sanguinea]
Length = 337
Score = 564 bits (1453), Expect = 5e-158
Identities = 274/326 (84%), Positives = 299/326 (91%)
Frame = -3
Query: 2370 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 2191
MVREKV VSTRTL+WKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLEWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 2190 CITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 2011
CITRAK E IPH+YS IVGIQESVHEILMNL E+VL+SNLYGTRNA ICV GPGY+TA+D
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGTRNASICVSGPGYVTAQD 120
Query: 2010 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 1831
I+ PPSVEIVDNTQHIA+LTEPI+LCIGL+IE+NRGY +K NNF+D SYPIDAVFMPV+
Sbjct: 121 IISPPSVEIVDNTQHIASLTEPIDLCIGLQIEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 180
Query: 1830 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 1651
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI+LFIPFLH EEE +LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 1650 NNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 1471
+NQH+VTLPLF FH+RL LRK KKE+ +YIFIDQ ELPPRIY CLK+SNIHTLLDLLN
Sbjct: 241 DNQHKVTLPLFTFHDRLAKLRKNKKEIALKYIFIDQSELPPRIYTCLKRSNIHTLLDLLN 300
Query: 1470 NSQEDLIKMEHFHIEDVKKILDILEK 1393
NSQEDL+K+EHF IEDVK+IL LEK
Sbjct: 301 NSQEDLMKIEHFRIEDVKEILGFLEK 326
>gi|91208933|ref|YP_538968.1| RNA polymerase alpha subunit [Gossypium hirsutum]
Length = 329
Score = 564 bits (1451), Expect = 8e-158
Identities = 276/329 (83%), Positives = 298/329 (90%), Gaps = 2/329 (0%)
Frame = -3
Query: 2370 MVREKVKV--STRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIE 2197
MVREKVKV STRT QWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGE+E
Sbjct: 1 MVREKVKVSTSTRTRQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGELE 60
Query: 2196 GTCITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITA 2017
GTCITRAK E IPH+YS IVGIQESVHEILMNL EIVL+ NLYGTRNA IC +GPGY+TA
Sbjct: 61 GTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRGNLYGTRNAFICAKGPGYVTA 120
Query: 2016 RDIVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMP 1837
+DI+LPPSVEIVDNTQH+A+LTEPI+LCIGL+IERNRGY +K NF D SYPIDAVFMP
Sbjct: 121 QDIILPPSVEIVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMP 180
Query: 1836 VQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFY 1657
V+NANHSIH YGN NEKQEILFLEIWTNGSLTPKEALHEASRNLI+LFIPFLH EEE +
Sbjct: 181 VRNANHSIHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLH 240
Query: 1656 LENNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDL 1477
LENNQH VTLP FPFH+RLV L KKKKE+ +YIFIDQ ELPPRIYNCLKKSNIHTLLDL
Sbjct: 241 LENNQHDVTLPFFPFHDRLVKLTKKKKEIALKYIFIDQSELPPRIYNCLKKSNIHTLLDL 300
Query: 1476 LNNSQEDLIKMEHFHIEDVKKILDILEKK 1390
LNNS+EDL+K+EHF IEDVK+IL ILEKK
Sbjct: 301 LNNSREDLMKIEHFRIEDVKQILGILEKK 329
>gi|290489678|gb|ADD31223.1| RNA polymerase alpha subunit protein [Berberidopsis
corallina]
Length = 337
Score = 563 bits (1449), Expect = 1e-157
Identities = 275/326 (84%), Positives = 299/326 (91%)
Frame = -3
Query: 2370 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 2191
MVREKV VSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 2190 CITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 2011
CITRAK E IPH+YS IVGIQESVHEILMNL EIVL+SNLYGT +A ICV+GPGY+TA+D
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 2010 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 1831
I+ PPSVEIVDNTQHIA+LTEPI+LCIGL+IERNRGY +K NNF+D SYPIDAVFMPV+
Sbjct: 121 IISPPSVEIVDNTQHIASLTEPIDLCIGLQIERNRGYRIKTLNNFQDGSYPIDAVFMPVR 180
Query: 1830 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 1651
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI+LFIPFLH EEE +LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 1650 NNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 1471
+NQH+ T PLF FH+RL LRK KKE+ +YIFIDQLELPPRIYNCLK+SNIHTL DLLN
Sbjct: 241 DNQHKATFPLFTFHDRLAKLRKNKKEIALKYIFIDQLELPPRIYNCLKRSNIHTLSDLLN 300
Query: 1470 NSQEDLIKMEHFHIEDVKKILDILEK 1393
NSQEDL+K+EHF IEDVK+IL ILEK
Sbjct: 301 NSQEDLMKIEHFRIEDVKQILGILEK 326
>gi|194132131|gb|ACF33385.1| RNA polymerase alpha subunit [Gonystylus bancanus]
Length = 329
Score = 560 bits (1443), Expect = 7e-157
Identities = 272/329 (82%), Positives = 296/329 (89%)
Frame = -3
Query: 2376 ITMVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIE 2197
+TMVREK KVSTRTLQWKCVESR DSK LYYGRFILSPLMKGQADTIGIAMRRALLGEIE
Sbjct: 1 MTMVREKGKVSTRTLQWKCVESRIDSKHLYYGRFILSPLMKGQADTIGIAMRRALLGEIE 60
Query: 2196 GTCITRAKFENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITA 2017
GTCITRAK E IPH+YS I GIQESVHEILMNL EIVL+SNLYGTRNA IC +GPGY+TA
Sbjct: 61 GTCITRAKSEKIPHEYSIIAGIQESVHEILMNLKEIVLRSNLYGTRNAFICAKGPGYVTA 120
Query: 2016 RDIVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMP 1837
+DI+LPPSVEIVDNTQHIA+LTEPI+LCIGL+IERNRGY +K NNF D SYPID VFMP
Sbjct: 121 QDIILPPSVEIVDNTQHIASLTEPIDLCIGLQIERNRGYGIKTPNNFHDGSYPIDVVFMP 180
Query: 1836 VQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFY 1657
V+N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI+LFIPFLH EEE +
Sbjct: 181 VRNVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENSH 240
Query: 1656 LENNQHQVTLPLFPFHNRLVNLRKKKKELGFQYIFIDQLELPPRIYNCLKKSNIHTLLDL 1477
LEN+QH+VTLP FPFH++L LRKKKKE+ +Y FIDQ ELPPRIYNCLK SNIHTL DL
Sbjct: 241 LENSQHKVTLPFFPFHDKLTKLRKKKKEIALKYFFIDQSELPPRIYNCLKTSNIHTLFDL 300
Query: 1476 LNNSQEDLIKMEHFHIEDVKKILDILEKK 1390
LN SQEDL+K+EHFH EDVK+IL I+E K
Sbjct: 301 LNKSQEDLMKIEHFHREDVKQILGIIENK 329
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,758,012,895,071
Number of Sequences: 15229318
Number of Extensions: 2758012895071
Number of Successful Extensions: 660010853
Number of sequences better than 0.0: 0
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