BLASTX 7.6.2
Query= UN38887 /QuerySize=912
(911 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|6069478|dbj|BAA85453.1| S-locus protein 4 [Brassica rapa] 424 8e-117
gi|18642418|emb|CAC81237.1| putative PCF11 protein [Brassica napus] 206 6e-051
gi|15239923|ref|NP_199175.1| Pre-mRNA cleavage complex II [Arabi... 145 1e-032
gi|297838177|ref|XP_002886970.1| hypothetical protein ARALYDRAFT... 143 4e-032
gi|15219679|ref|NP_176823.1| Pre-mRNA cleavage complex II [Arabi... 89 6e-016
gi|18086323|gb|AAL57625.1| At1g66500/F28G11_6 [Arabidopsis thali... 89 6e-016
gi|224133368|ref|XP_002328025.1| predicted protein [Populus tric... 84 4e-014
gi|30679905|ref|NP_680598.2| PCF11P-similar protein 4 [Arabidops... 83 5e-014
gi|4115937|gb|AAD03447.1| contains similarity to human PCF11p ho... 83 5e-014
gi|297809667|ref|XP_002872717.1| hypothetical protein ARALYDRAFT... 83 5e-014
gi|224092962|ref|XP_002309773.1| predicted protein [Populus tric... 82 8e-014
gi|224113885|ref|XP_002316604.1| predicted protein [Populus tric... 82 1e-013
gi|226501012|ref|NP_001146686.1| hypothetical protein LOC1002802... 79 7e-013
gi|115475109|ref|NP_001061151.1| Os08g0187700 [Oryza sativa Japo... 79 9e-013
gi|125560388|gb|EAZ05836.1| hypothetical protein OsI_28072 [Oryz... 79 9e-013
gi|125602422|gb|EAZ41747.1| hypothetical protein OsJ_26286 [Oryz... 79 9e-013
gi|225444359|ref|XP_002264786.1| PREDICTED: hypothetical protein... 77 3e-012
>gi|6069478|dbj|BAA85453.1| S-locus protein 4 [Brassica rapa]
Length = 413
Score = 424 bits (1090), Expect = 8e-117
Identities = 223/280 (79%), Positives = 236/280 (84%), Gaps = 20/280 (7%)
Frame = +1
Query: 115 MSSS----VHQRNSHRHAGNT-LKRPFDSPGGYGGRIGGFQ--EEERSRYAPPSQKRPRY 273
MSSS VHQRN+HR+ G T LKRP D+ G RIGGFQ EEERSRYA P QKRPRY
Sbjct: 1 MSSSNGVFVHQRNAHRNGGRTMLKRPIDN---RGCRIGGFQEEEEERSRYAQP-QKRPRY 56
Query: 274 -QTQPQFQS------GTPPLYNRRHQHDSNLSRVSNYGDVINSNSSNISSFAHSNSQSNA 432
Q Q QFQS GTPP+Y H HDSNLSRVSNYGDVINSNSSN+ FA N++SNA
Sbjct: 57 HQAQTQFQSAKPAGGGTPPMYRHHHHHDSNLSRVSNYGDVINSNSSNVFPFALRNNESNA 116
Query: 433 DYQKPYGYGNPNPQSVPLPLPYRKLDGFDSLPEWVPNLAPNTNREITGVRFNANQVSQ-P 609
DYQ+PYGY NPNPQ+VPLPLPYRKLDGFDSLPEWVPN PNTNREITGVRFN NQ+SQ P
Sbjct: 117 DYQRPYGYRNPNPQTVPLPLPYRKLDGFDSLPEWVPNFVPNTNREITGVRFNGNQLSQAP 176
Query: 610 PVFTNLPNSMPLTHSNVVSVVSQSLLPQQPIVSKELADLLSVLNNKEKECDIGLDFDKIN 789
PVFTNLPNSMPL HSN+VSVVSQS LPQQPIVSKELADLLSVLNN EKE DIGLDFDKIN
Sbjct: 177 PVFTNLPNSMPLNHSNMVSVVSQS-LPQQPIVSKELADLLSVLNNNEKESDIGLDFDKIN 235
Query: 790 LNVRRESVVKSLYSDMPRQCSSCGVRFQCQDEHSKHMDWH 909
LNVR ESVVKSLYSDMPRQCSSCGVRF+CQ+EHSKHMDWH
Sbjct: 236 LNVRHESVVKSLYSDMPRQCSSCGVRFKCQEEHSKHMDWH 275
>gi|18642418|emb|CAC81237.1| putative PCF11 protein [Brassica napus]
Length = 377
Score = 206 bits (522), Expect = 6e-051
Identities = 122/195 (62%), Positives = 137/195 (70%), Gaps = 27/195 (13%)
Frame = +1
Query: 115 MSSS----VHQRNSHRHAGNT-LKRPFDSPGGYGGRIGGFQ--EEERSRYAPPSQKRPRY 273
MSSS VHQRN+HR+ G T LKRP D+ G RIGGFQ EEERSRYA P QKRPRY
Sbjct: 1 MSSSNGVFVHQRNAHRNGGRTMLKRPIDN---RGCRIGGFQEEEEERSRYAQP-QKRPRY 56
Query: 274 -QTQPQFQS------GTPPLYNRRHQHDSNLSRVSNYGDVINSNSSNISSFAHSNSQSNA 432
Q Q QFQS GTPP+Y RH HDSNLSRVSNYGDVINSNSSN+ FA N++SNA
Sbjct: 57 HQAQTQFQSAKPAGGGTPPMY--RH-HDSNLSRVSNYGDVINSNSSNVFPFALRNNESNA 113
Query: 433 DYQKPYGYGNPNPQSVPLPLPYRKLDGFDSLPEWVPNLAPNTNREITGVRFNANQVSQPP 612
DYQ+PYGY NPNPQSVPLPLPYRKLDGFDSLPEWVPN N N + + QP
Sbjct: 114 DYQRPYGYRNPNPQSVPLPLPYRKLDGFDSLPEWVPNYVTNANPCVAII------TQQPV 167
Query: 613 VFTNLPNSMPLTHSN 657
V L + + + ++N
Sbjct: 168 VSKELADLLSVLNNN 182
Score = 149 bits (374), Expect = 9e-034
Identities = 74/100 (74%), Positives = 84/100 (84%), Gaps = 4/100 (4%)
Frame = +1
Query: 616 FTNLPNSMPLTHSNVVSVVSQSLLPQQPIVSKELADLLSVLNN--KEKECDIGLDFDKIN 789
F +LP +P +N V +++ QQP+VSKELADLLSVLNN KEKECD+GLDFDKIN
Sbjct: 141 FDSLPEWVPNYVTNANPCV--AIITQQPVVSKELADLLSVLNNNEKEKECDLGLDFDKIN 198
Query: 790 LNVRRESVVKSLYSDMPRQCSSCGVRFQCQDEHSKHMDWH 909
LNVR ESVVKSLYSDMPRQCSSCGVRF+CQ+EHSKHMDWH
Sbjct: 199 LNVRHESVVKSLYSDMPRQCSSCGVRFKCQEEHSKHMDWH 238
>gi|15239923|ref|NP_199175.1| Pre-mRNA cleavage complex II [Arabidopsis
thaliana]
Length = 410
Score = 145 bits (365), Expect = 1e-032
Identities = 99/177 (55%), Positives = 117/177 (66%), Gaps = 23/177 (12%)
Frame = +1
Query: 133 QRNSHRHAGNTLKRPFDSPGGYGGRIGGFQEEERSRYAPPSQKRPRYQTQPQFQSGTPPL 312
QRN+ +AG T+KR D+ GYGG IG +Q EER+RYAPP QKR R Q Q QF+SG PL
Sbjct: 10 QRNA--NAGTTMKRRNDN-RGYGGGIGCYQ-EERNRYAPP-QKRFRSQLQQQFRSGHNPL 64
Query: 313 YNRRHQHDSNLSRVS-----NYG-DVINSNSSNISSFAHSNSQSNA-DYQKPY-GYGNPN 468
Y+ ++N+SRVS NYG DVI SN SSFA N+ SN +YQKP+ YGNPN
Sbjct: 65 YHYGSNTNNNVSRVSSQSYNNYGVDVIASN----SSFALPNNDSNTNNYQKPFVVYGNPN 120
Query: 469 PQSVPLPLPYRKLDGFDSLPEWVPNLAPNTNREITGVRFNANQVSQPPVFTNLPNSM 639
PQ VPLPLPYRKLD DSLP+WVPN PN VR ++N V P FTN+ N M
Sbjct: 121 PQIVPLPLPYRKLDPLDSLPQWVPNSTPN-----YPVR-SSNFVPNTPDFTNVQNPM 171
Score = 91 bits (225), Expect = 2e-016
Identities = 45/82 (54%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Frame = +1
Query: 667 VVSQSLLPQQPIVSKELADLLSVLNNKEKECDIGLDFDK-INLNVRRESVVKSLYSDMPR 843
V+S+ L +++ E S +N + +GL FD +LNVR ESV+KSLYSDMPR
Sbjct: 189 VLSKELTDLLSLLNNEKEKKTSEASNND-SLPVGLSFDNPSSLNVRHESVIKSLYSDMPR 247
Query: 844 QCSSCGVRFQCQDEHSKHMDWH 909
QC+SCGVRF+CQ+EHSKHMDWH
Sbjct: 248 QCTSCGVRFKCQEEHSKHMDWH 269
>gi|297838177|ref|XP_002886970.1| hypothetical protein ARALYDRAFT_338779
[Arabidopsis lyrata subsp. lyrata]
Length = 466
Score = 143 bits (360), Expect = 4e-032
Identities = 98/175 (56%), Positives = 115/175 (65%), Gaps = 26/175 (14%)
Frame = +1
Query: 133 QRNSHR--HAGNTLKRPFDSPGGYGGRIGGFQEEERSRYAPPSQKRPRYQTQPQ--FQSG 300
QRN+HR +AG TLKR D+ GYG IG Q EER+RY PP QKR R QTQPQ F+SG
Sbjct: 10 QRNAHRNANAGTTLKRRIDNNRGYG--IGDLQ-EERNRYVPP-QKRFRSQTQPQTNFRSG 65
Query: 301 TPPLYNRRHQHDSNLSRVS-----NYG-DVINSNSSNISSFAHSNSQSNA-DYQKPY--G 453
PLY+ ++++N+SRVS NYG DVI SN SSF N+ SN +YQKP+ G
Sbjct: 66 HIPLYHHHGRNNNNMSRVSSQSYNNYGVDVIASN----SSFPLRNNDSNINNYQKPFIVG 121
Query: 454 YGNPNPQSVPLPLPYRKLDGFDSLPEWVPN---LAPN--TNREITGVRFNANQVS 603
YGNPNPQ VPLPLPYRKLD DSLPEWVPN L PN N + ++N VS
Sbjct: 122 YGNPNPQIVPLPLPYRKLDDDDSLPEWVPNSRTLTPNFVPNTYVQNPMNHSNMVS 176
Score = 92 bits (226), Expect = 1e-016
Identities = 41/57 (71%), Positives = 47/57 (82%), Gaps = 1/57 (1%)
Frame = +1
Query: 742 NKEKECDIGLDFDK-INLNVRRESVVKSLYSDMPRQCSSCGVRFQCQDEHSKHMDWH 909
+K +GL FD +LNVR ESV+KSLYSDMPRQCSSCGVRF+CQ+EHSKHMDWH
Sbjct: 213 SKSDSLPVGLSFDNPSSLNVRHESVIKSLYSDMPRQCSSCGVRFKCQEEHSKHMDWH 269
>gi|15219679|ref|NP_176823.1| Pre-mRNA cleavage complex II [Arabidopsis
thaliana]
Length = 416
Score = 89 bits (220), Expect = 6e-016
Identities = 39/50 (78%), Positives = 45/50 (90%), Gaps = 1/50 (2%)
Frame = +1
Query: 763 IGLDFDK-INLNVRRESVVKSLYSDMPRQCSSCGVRFQCQDEHSKHMDWH 909
+GL FD +LNVR ESV+KSLYSDMPRQCSSCG+RF+CQ+EHSKHMDWH
Sbjct: 227 VGLSFDNPSSLNVRHESVIKSLYSDMPRQCSSCGLRFKCQEEHSKHMDWH 276
>gi|18086323|gb|AAL57625.1| At1g66500/F28G11_6 [Arabidopsis thaliana]
Length = 416
Score = 89 bits (220), Expect = 6e-016
Identities = 39/50 (78%), Positives = 45/50 (90%), Gaps = 1/50 (2%)
Frame = +1
Query: 763 IGLDFDK-INLNVRRESVVKSLYSDMPRQCSSCGVRFQCQDEHSKHMDWH 909
+GL FD +LNVR ESV+KSLYSDMPRQCSSCG+RF+CQ+EHSKHMDWH
Sbjct: 227 VGLSFDNPSSLNVRHESVIKSLYSDMPRQCSSCGLRFKCQEEHSKHMDWH 276
>gi|224133368|ref|XP_002328025.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 84 bits (205), Expect = 4e-014
Identities = 37/62 (59%), Positives = 48/62 (77%)
Frame = +1
Query: 724 LLSVLNNKEKECDIGLDFDKINLNVRRESVVKSLYSDMPRQCSSCGVRFQCQDEHSKHMD 903
L+S L KE + G+ FD L VR ESV++SLY+DMPRQCS+CG+RF+ Q++HSKHMD
Sbjct: 359 LMSSLIKKEDDFRGGVVFDANQLKVRHESVIRSLYADMPRQCSTCGIRFKFQEDHSKHMD 418
Query: 904 WH 909
WH
Sbjct: 419 WH 420
>gi|30679905|ref|NP_680598.2| PCF11P-similar protein 4 [Arabidopsis thaliana]
Length = 808
Score = 83 bits (204), Expect = 5e-014
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = +1
Query: 724 LLSVLNNKEKECDIGLDFDKINLNVRRESVVKSLYSDMPRQCSSCGVRFQCQDEHSKHMD 903
L+S+ N + +GL+FD L +R ES + +LY D+PRQC++CG+RF+CQ+EHSKHMD
Sbjct: 612 LISLNNQPAGQGPLGLEFDADMLKIRNESAISALYGDLPRQCTTCGLRFKCQEEHSKHMD 671
Query: 904 WH 909
WH
Sbjct: 672 WH 673
>gi|4115937|gb|AAD03447.1| contains similarity to human PCF11p homolog
(GB:AF046935) [Arabidopsis thaliana]
Length = 827
Score = 83 bits (204), Expect = 5e-014
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = +1
Query: 724 LLSVLNNKEKECDIGLDFDKINLNVRRESVVKSLYSDMPRQCSSCGVRFQCQDEHSKHMD 903
L+S+ N + +GL+FD L +R ES + +LY D+PRQC++CG+RF+CQ+EHSKHMD
Sbjct: 635 LISLNNQPAGQGPLGLEFDADMLKIRNESAISALYGDLPRQCTTCGLRFKCQEEHSKHMD 694
Query: 904 WH 909
WH
Sbjct: 695 WH 696
>gi|297809667|ref|XP_002872717.1| hypothetical protein ARALYDRAFT_490122
[Arabidopsis lyrata subsp. lyrata]
Length = 809
Score = 83 bits (204), Expect = 5e-014
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = +1
Query: 724 LLSVLNNKEKECDIGLDFDKINLNVRRESVVKSLYSDMPRQCSSCGVRFQCQDEHSKHMD 903
L+S+ N + +GL+FD L +R ES + +LY D+PRQC++CG+RF+CQ+EHSKHMD
Sbjct: 613 LISLNNQPAGQGPLGLEFDADMLKIRNESAISALYGDLPRQCTTCGLRFKCQEEHSKHMD 672
Query: 904 WH 909
WH
Sbjct: 673 WH 674
>gi|224092962|ref|XP_002309773.1| predicted protein [Populus trichocarpa]
Length = 553
Score = 82 bits (202), Expect = 8e-014
Identities = 35/62 (56%), Positives = 46/62 (74%)
Frame = +1
Query: 724 LLSVLNNKEKECDIGLDFDKINLNVRRESVVKSLYSDMPRQCSSCGVRFQCQDEHSKHMD 903
LL+ L KE + G+ FD L VR ES ++SLY+DMPRQCS+CG RF+CQ++H +HMD
Sbjct: 395 LLNSLMKKEDDFSGGVVFDANQLKVRHESAIRSLYADMPRQCSTCGTRFKCQEDHREHMD 454
Query: 904 WH 909
WH
Sbjct: 455 WH 456
>gi|224113885|ref|XP_002316604.1| predicted protein [Populus trichocarpa]
Length = 1031
Score = 82 bits (200), Expect = 1e-013
Identities = 50/137 (36%), Positives = 71/137 (51%), Gaps = 23/137 (16%)
Frame = +1
Query: 523 LPEWVPNLAPNTNREITGVRFNANQVSQPPVFTNLPNSMPLTHSNVVSVVSQSLLPQQP- 699
LP V N+ PNT GVR PP+ P +MP + + S P QP
Sbjct: 750 LPLAVSNV-PNTLHSQVGVR--------PPLPQGPPQTMPFPQN------ASSGAPAQPS 794
Query: 700 -------IVSKELADLLSVLNNKEKECDIGLDFDKINLNVRRESVVKSLYSDMPRQCSSC 858
I S L+++ + +GL+F+ L +R ES + +LYSD+PRQC++C
Sbjct: 795 GIAFSGLINSLMAQGLITMTKQTPVQDSVGLEFNADLLKLRYESAISALYSDLPRQCTTC 854
Query: 859 GVRFQCQDEHSKHMDWH 909
G+R +CQ+EHS HMDWH
Sbjct: 855 GLRLKCQEEHSSHMDWH 871
>gi|226501012|ref|NP_001146686.1| hypothetical protein LOC100280286 [Zea mays]
Length = 729
Score = 79 bits (194), Expect = 7e-013
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 6/100 (6%)
Frame = +1
Query: 625 LPNSMPLTHSNVVSVVSQSLLPQQPIVSKELADL-----LSVLNNKEKECDIGLDFDKIN 789
LP P S + S + QP VS L++L +S+ + + +G+DF+ ++
Sbjct: 509 LPPGPPAPVSLQMGSSSSQVGGPQPFVSGLLSNLMRHGVISLEPPSQSQDSVGVDFN-VD 567
Query: 790 LNVRRESVVKSLYSDMPRQCSSCGVRFQCQDEHSKHMDWH 909
L VR ESV +LY D+PRQC +CG+RF+CQ+EH HMDWH
Sbjct: 568 LKVRNESVTNALYQDLPRQCKTCGLRFKCQEEHRAHMDWH 607
>gi|115475109|ref|NP_001061151.1| Os08g0187700 [Oryza sativa Japonica Group]
Length = 971
Score = 79 bits (193), Expect = 9e-013
Identities = 37/84 (44%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Frame = +1
Query: 673 SQSLLPQQPIVSKELADL-----LSVLNNKEKECDIGLDFDKINLNVRRESVVKSLYSDM 837
S S + P+VS L++L +S+ + + +G+DF+ ++L VR ESV+ +LY D+
Sbjct: 768 SSSQVGGPPLVSGLLSNLMQHGIISLQPPSQPQDSVGVDFN-VDLKVRNESVINALYQDL 826
Query: 838 PRQCSSCGVRFQCQDEHSKHMDWH 909
PRQC +CG+RF+CQ+EH HMDWH
Sbjct: 827 PRQCKTCGLRFKCQEEHRAHMDWH 850
>gi|125560388|gb|EAZ05836.1| hypothetical protein OsI_28072 [Oryza sativa Indica
Group]
Length = 970
Score = 79 bits (193), Expect = 9e-013
Identities = 37/84 (44%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Frame = +1
Query: 673 SQSLLPQQPIVSKELADL-----LSVLNNKEKECDIGLDFDKINLNVRRESVVKSLYSDM 837
S S + P+VS L++L +S+ + + +G+DF+ ++L VR ESV+ +LY D+
Sbjct: 767 SSSQVGGPPLVSGLLSNLMQHGIISLQPPSQPQDSVGVDFN-VDLKVRNESVINALYQDL 825
Query: 838 PRQCSSCGVRFQCQDEHSKHMDWH 909
PRQC +CG+RF+CQ+EH HMDWH
Sbjct: 826 PRQCKTCGLRFKCQEEHRAHMDWH 849
>gi|125602422|gb|EAZ41747.1| hypothetical protein OsJ_26286 [Oryza sativa
Japonica Group]
Length = 974
Score = 79 bits (193), Expect = 9e-013
Identities = 37/84 (44%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Frame = +1
Query: 673 SQSLLPQQPIVSKELADL-----LSVLNNKEKECDIGLDFDKINLNVRRESVVKSLYSDM 837
S S + P+VS L++L +S+ + + +G+DF+ ++L VR ESV+ +LY D+
Sbjct: 768 SSSQVGGPPLVSGLLSNLMQHGIISLQPPSQPQDSVGVDFN-VDLKVRNESVINALYQDL 826
Query: 838 PRQCSSCGVRFQCQDEHSKHMDWH 909
PRQC +CG+RF+CQ+EH HMDWH
Sbjct: 827 PRQCKTCGLRFKCQEEHRAHMDWH 850
>gi|225444359|ref|XP_002264786.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 1000
Score = 77 bits (189), Expect = 3e-012
Identities = 38/101 (37%), Positives = 56/101 (55%)
Frame = +1
Query: 607 PPVFTNLPNSMPLTHSNVVSVVSQSLLPQQPIVSKELADLLSVLNNKEKECDIGLDFDKI 786
PP T+ ++P +VS I S L+S+ + +G++F+
Sbjct: 765 PPPATSQMINIPQNTGPIVSNQQPGSALSGLISSLMAQGLISLAKQPTVQDSVGIEFNVD 824
Query: 787 NLNVRRESVVKSLYSDMPRQCSSCGVRFQCQDEHSKHMDWH 909
L VR ES + +LY DM RQC++CG+RF+CQ+EHS HMDWH
Sbjct: 825 LLKVRHESAISALYGDMSRQCTTCGLRFKCQEEHSSHMDWH 865
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,369,264,541,557
Number of Sequences: 15229318
Number of Extensions: 4369264541557
Number of Successful Extensions: 1024086044
Number of sequences better than 0.0: 0
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