BLASTX 7.6.2
Query= UN43224 /QuerySize=699
(698 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O44437|SMD3_DROME Small nuclear ribonucleoprotein Sm D3 OS=Dr... 141 4e-033
sp|P62318|SMD3_HUMAN Small nuclear ribonucleoprotein Sm D3 OS=Ho... 139 2e-032
sp|P62320|SMD3_MOUSE Small nuclear ribonucleoprotein Sm D3 OS=Mu... 139 2e-032
sp|P62323|SMD3_XENLA Small nuclear ribonucleoprotein Sm D3 OS=Xe... 139 2e-032
sp|Q17348|SMD3_CAEEL Small nuclear ribonucleoprotein Sm D3 OS=Ca... 128 5e-029
sp|Q9UUC6|SMD3_SCHPO Probable small nuclear ribonucleoprotein Sm... 114 9e-025
sp|P43321|SMD3_YEAST Small nuclear ribonucleoprotein Sm D3 OS=Sa... 103 1e-021
sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protei... 71 5e-012
sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS... 69 2e-011
sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS... 69 2e-011
sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1 OS=Bo... 68 4e-011
sp|P62314|SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 OS=Ho... 68 4e-011
sp|Q4R5F6|SMD1_MACFA Small nuclear ribonucleoprotein Sm D1 OS=Ma... 68 4e-011
sp|P62315|SMD1_MOUSE Small nuclear ribonucleoprotein Sm D1 OS=Mu... 68 4e-011
sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protei... 67 8e-011
sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protei... 67 1e-010
sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS... 66 2e-010
sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protei... 66 2e-010
sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protei... 65 4e-010
sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protei... 57 1e-007
>sp|O44437|SMD3_DROME Small nuclear ribonucleoprotein Sm D3 OS=Drosophila
melanogaster GN=SmD3 PE=1 SV=1
Length = 151
Score = 141 bits (355), Expect = 4e-033
Identities = 70/132 (53%), Positives = 94/132 (71%), Gaps = 13/132 (9%)
Frame = +3
Query: 108 SLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITFTAQDGKISQLEHV 287
S+G+P+K+LHEA GHI+T E +GE+YRG +IE EDN NCQ+ IT T +DG+ + LE+V
Sbjct: 2 SIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENV 61
Query: 288 FIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSGSLGVGRGRAAM---------RGKPPA 440
+IRGSK+RF+++PD+LK+APMFK+ KG G+ GRG+AA+ RG PP
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKKQTG--KGLGGT--AGRGKAAILRAQARGRGRGGPPG 117
Query: 441 TGRGTGGRGAAP 476
GRGTGG AP
Sbjct: 118 GGRGTGGPPGAP 129
>sp|P62318|SMD3_HUMAN Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens
GN=SNRPD3 PE=1 SV=1
Length = 126
Score = 139 bits (350), Expect = 2e-032
Identities = 67/122 (54%), Positives = 93/122 (76%), Gaps = 6/122 (4%)
Frame = +3
Query: 108 SLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITFTAQDGKISQLEHV 287
S+G+P+K+LHEA GHIVT E +GE+YRG +IE EDN NCQ+ +IT T +DG+++QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 288 FIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSGSLGVGRGRAA-MRGKPPATGRGTG-G 461
+IRGSK+RF+++PD+LK+APM K + K K+ G GRG+AA ++ + A GRG G G
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 117
Query: 462 RG 467
RG
Sbjct: 118 RG 119
>sp|P62320|SMD3_MOUSE Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus
GN=Snrpd3 PE=1 SV=1
Length = 126
Score = 139 bits (350), Expect = 2e-032
Identities = 67/122 (54%), Positives = 93/122 (76%), Gaps = 6/122 (4%)
Frame = +3
Query: 108 SLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITFTAQDGKISQLEHV 287
S+G+P+K+LHEA GHIVT E +GE+YRG +IE EDN NCQ+ +IT T +DG+++QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 288 FIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSGSLGVGRGRAA-MRGKPPATGRGTG-G 461
+IRGSK+RF+++PD+LK+APM K + K K+ G GRG+AA ++ + A GRG G G
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 117
Query: 462 RG 467
RG
Sbjct: 118 RG 119
>sp|P62323|SMD3_XENLA Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis
GN=snrpd3 PE=2 SV=1
Length = 126
Score = 139 bits (350), Expect = 2e-032
Identities = 67/122 (54%), Positives = 93/122 (76%), Gaps = 6/122 (4%)
Frame = +3
Query: 108 SLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITFTAQDGKISQLEHV 287
S+G+P+K+LHEA GHIVT E +GE+YRG +IE EDN NCQ+ +IT T +DG+++QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 288 FIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSGSLGVGRGRAA-MRGKPPATGRGTG-G 461
+IRGSK+RF+++PD+LK+APM K + K K+ G GRG+AA ++ + A GRG G G
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 117
Query: 462 RG 467
RG
Sbjct: 118 RG 119
>sp|Q17348|SMD3_CAEEL Small nuclear ribonucleoprotein Sm D3 OS=Caenorhabditis
elegans GN=snr-1 PE=2 SV=2
Length = 136
Score = 128 bits (320), Expect = 5e-029
Identities = 60/119 (50%), Positives = 87/119 (73%), Gaps = 7/119 (5%)
Frame = +3
Query: 108 SLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITFTAQDGKISQLEHV 287
S+G+P+K+LHEA GH+VT+E +GE+YRG + E EDN NCQL + T +DG+ QL++V
Sbjct: 3 SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNV 62
Query: 288 FIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSGSLGVGRGRAAMRGKPPATGRGTGGR 464
FIRG+K+RFM++PD+LK+APMFK + + + G++G+G G RG+ GRGT R
Sbjct: 63 FIRGNKIRFMILPDMLKNAPMFKNIG---RAQKGAIGMGLGGLDQRGR----GRGTAFR 114
>sp|Q9UUC6|SMD3_SCHPO Probable small nuclear ribonucleoprotein Sm D3
OS=Schizosaccharomyces pombe GN=smd3 PE=2 SV=1
Length = 97
Score = 114 bits (283), Expect = 9e-025
Identities = 47/82 (57%), Positives = 68/82 (82%)
Frame = +3
Query: 111 LGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITFTAQDGKISQLEHVF 290
+ + +KLLHE GHIVT+EL++G YRG +IE EDN NCQ+ DI+ TA+DG++S L+ V+
Sbjct: 1 MSLCIKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVY 60
Query: 291 IRGSKVRFMVIPDILKHAPMFK 356
IRGS +RF+++PD+L++APMFK
Sbjct: 61 IRGSHIRFLIVPDMLRNAPMFK 82
>sp|P43321|SMD3_YEAST Small nuclear ribonucleoprotein Sm D3 OS=Saccharomyces
cerevisiae GN=SMD3 PE=1 SV=1
Length = 101
Score = 103 bits (256), Expect = 1e-021
Identities = 43/86 (50%), Positives = 67/86 (77%)
Frame = +3
Query: 114 GIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITFTAQDGKISQLEHVFI 293
GIPVKLL+EA GHIV++EL +G YRG ++E ED+ N QL D+ T G ++ ++ +F+
Sbjct: 5 GIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFV 64
Query: 294 RGSKVRFMVIPDILKHAPMFKRLDAR 371
RGS+++F+V+PD+LK+AP+FK+ +R
Sbjct: 65 RGSQIKFIVVPDLLKNAPLFKKNSSR 90
>sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza
sativa subsp. japonica GN=Os01g0256900 PE=2 SV=1
Length = 147
Score = 71 bits (173), Expect = 5e-012
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Frame = +3
Query: 117 IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITFTAQDG-KISQLEHVFI 293
+P+ LL A GH + VELK+GE Y G ++ C+ N L ++ T++DG K ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 294 RGSKVRFMVIPDILKHAPMFKRLDARIKGKSGSLGVGRGRAAMRGKPPATGRGTG 458
RG+ ++++ +PD + + +R + +G GRGR + KP G G G
Sbjct: 62 RGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRGDIGTKPGGRGIGRG 116
>sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus
GN=LSM4 PE=2 SV=1
Length = 139
Score = 69 bits (168), Expect = 2e-011
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 14/119 (11%)
Frame = +3
Query: 117 IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNW-NCQLEDITFTAQDG-KISQLEHVF 290
+P+ LL A H + VELK+GE Y G ++ C DNW N L ++ T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 291 IRGSKVRFMVIPDILKHAPMFKRLDARIKGKSGSLGVGRGRAAMRGKPPATGRGTGGRG 467
IRGS ++++ IPD + +D K + GRGR ++ + GRG GG G
Sbjct: 61 IRGSTIKYLRIPDEI--------ID---MVKEEVVAKGRGRGGLQQQKQQKGRGMGGAG 108
>sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens
GN=LSM4 PE=1 SV=1
Length = 139
Score = 69 bits (168), Expect = 2e-011
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 14/119 (11%)
Frame = +3
Query: 117 IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNW-NCQLEDITFTAQDG-KISQLEHVF 290
+P+ LL A H + VELK+GE Y G ++ C DNW N L ++ T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 291 IRGSKVRFMVIPDILKHAPMFKRLDARIKGKSGSLGVGRGRAAMRGKPPATGRGTGGRG 467
IRGS ++++ IPD + +D K + GRGR ++ + GRG GG G
Sbjct: 61 IRGSTIKYLRIPDEI--------ID---MVKEEVVAKGRGRGGLQQQKQQKGRGMGGAG 108
>sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus
GN=SNRPD1 PE=3 SV=1
Length = 119
Score = 68 bits (165), Expect = 4e-011
Identities = 36/113 (31%), Positives = 61/113 (53%)
Frame = +3
Query: 123 VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITFTAQDGKISQLEHVFIRGS 302
V+ L + S VT+ELK+G G++ + + N L+ + T ++ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 303 KVRFMVIPDILKHAPMFKRLDARIKGKSGSLGVGRGRAAMRGKPPATGRGTGG 461
+R+ ++PD L + ++ ++K K GRGR RG+ GRG GG
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGG 116
>sp|P62314|SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens
GN=SNRPD1 PE=1 SV=1
Length = 119
Score = 68 bits (165), Expect = 4e-011
Identities = 36/113 (31%), Positives = 61/113 (53%)
Frame = +3
Query: 123 VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITFTAQDGKISQLEHVFIRGS 302
V+ L + S VT+ELK+G G++ + + N L+ + T ++ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 303 KVRFMVIPDILKHAPMFKRLDARIKGKSGSLGVGRGRAAMRGKPPATGRGTGG 461
+R+ ++PD L + ++ ++K K GRGR RG+ GRG GG
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGG 116
>sp|Q4R5F6|SMD1_MACFA Small nuclear ribonucleoprotein Sm D1 OS=Macaca
fascicularis GN=SNRPD1 PE=3 SV=1
Length = 119
Score = 68 bits (165), Expect = 4e-011
Identities = 36/113 (31%), Positives = 61/113 (53%)
Frame = +3
Query: 123 VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITFTAQDGKISQLEHVFIRGS 302
V+ L + S VT+ELK+G G++ + + N L+ + T ++ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 303 KVRFMVIPDILKHAPMFKRLDARIKGKSGSLGVGRGRAAMRGKPPATGRGTGG 461
+R+ ++PD L + ++ ++K K GRGR RG+ GRG GG
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGG 116
>sp|P62315|SMD1_MOUSE Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus
GN=Snrpd1 PE=2 SV=1
Length = 119
Score = 68 bits (165), Expect = 4e-011
Identities = 36/113 (31%), Positives = 61/113 (53%)
Frame = +3
Query: 123 VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITFTAQDGKISQLEHVFIRGS 302
V+ L + S VT+ELK+G G++ + + N L+ + T ++ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 303 KVRFMVIPDILKHAPMFKRLDARIKGKSGSLGVGRGRAAMRGKPPATGRGTGG 461
+R+ ++PD L + ++ ++K K GRGR RG+ GRG GG
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGG 116
>sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus
sylvatica GN=LSM4 PE=2 SV=1
Length = 148
Score = 67 bits (163), Expect = 8e-011
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Frame = +3
Query: 117 IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITFTAQDG-KISQLEHVFI 293
+P+ LL A GH + VELKSGE Y G ++ C+ N L ++ T++DG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYI 61
Query: 294 RGSKVRFMVIPDILKHAPMFKRLDARIKGKSGSLGVGRGRAAMRGKPPATGRGTG 458
RG+ ++++ +PD + + + +R K +G GRGR G RG G
Sbjct: 62 RGNTIKYLRVPDEVID-KVQEETKSRADRKPPGVGRGRGRGREEGSGARQVRGAG 115
>sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protein LSm4
OS=Caenorhabditis elegans GN=lsm-4 PE=3 SV=1
Length = 123
Score = 67 bits (162), Expect = 1e-010
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 9/124 (7%)
Frame = +3
Query: 117 IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITFTAQDG-KISQLEHVFI 293
+P+ LL A H + VELK+GE Y G + C+ N L D+ FT++DG K ++ ++
Sbjct: 3 LPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYV 62
Query: 294 RGSKVRFMVIP----DILKHAPMFKRLDARIKGKSGSLGVGRGRAAMRGKPPATGRGTGG 461
RGS ++++ IP D++K R R + + S G G GR RG G GG
Sbjct: 63 RGSTIKYLRIPETVVDLVKTEVNEVR---RQQQREQSRGRGGGRGG-RGGHRGGGGNRGG 118
Query: 462 RGAA 473
RG A
Sbjct: 119 RGGA 122
>sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus
GN=Lsm4 PE=2 SV=1
Length = 137
Score = 66 bits (160), Expect = 2e-010
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 13/122 (10%)
Frame = +3
Query: 117 IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNW-NCQLEDITFTAQDG-KISQLEHVF 290
+P+ LL A H + VELK+GE Y G ++ C DNW N L ++ T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 291 IRGSKVRFMVIPDILKHAPMFKRLDARIKGKSG-----SLGVGRGRAAMRGKPPATGRGT 455
IRGS ++++ IPD + M + A+ +G+ G G G G A G+ GRG
Sbjct: 61 IRGSTIKYLRIPDEI--IDMVREEAAKGRGRGGPQQKQQKGRGMGGA---GRGVFGGRGR 115
Query: 456 GG 461
GG
Sbjct: 116 GG 117
>sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4
OS=Nicotiana tabacum PE=2 SV=1
Length = 146
Score = 66 bits (159), Expect = 2e-010
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 15/128 (11%)
Frame = +3
Query: 117 IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITFTAQDG-KISQLEHVFI 293
+P+ LL A GH + VELK+GE Y G ++ C+ N L ++ T++DG + ++ ++
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYV 61
Query: 294 RGSKVRFMVIPDILKHAPMFKRLDARIKGKSGSLGVGRGRAAMRG---------KPPATG 446
RG+ ++++ +PD + ++ K ++ G GRA RG +P G
Sbjct: 62 RGNTIKYLRVPD-----EVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIG 116
Query: 447 RGTGGRGA 470
RG GA
Sbjct: 117 RGMDDGGA 124
>sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protein LSm4
OS=Dictyostelium discoideum GN=lsm4 PE=3 SV=1
Length = 177
Score = 65 bits (157), Expect = 4e-010
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Frame = +3
Query: 117 IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNW-NCQLEDITFTAQDG-KISQLEHVF 290
+P+ LL GH + VELK+GE Y G ++ C DNW N L+++ T++D K +++ +
Sbjct: 2 LPLSLLRTGQGHQIMVELKNGETYNGLLVNC-DNWMNINLKNVIRTSKDSDKFWKIQSCY 60
Query: 291 IRGSKVRFMVIPDILKHAPMFKRLDARI---KGKSGSLGVGRGRA-AMRGKPPATGRGTG 458
IRG+ ++++ +PD + + R + + G GRG A RG+ A+GRG G
Sbjct: 61 IRGNTIKYISVPDEIIDLVAEEEQTLRTTYQQRNDSNRGRGRGDGFAGRGRGDASGRGRG 120
>sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4
OS=Schizosaccharomyces pombe GN=lsm4 PE=2 SV=1
Length = 121
Score = 57 bits (135), Expect = 1e-007
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Frame = +3
Query: 117 IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITFTAQDG-KISQLEHVFI 293
+P+ LL+ G + VELK+GE + G + C++ N L ++ T DG K +L +I
Sbjct: 2 LPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYI 61
Query: 294 RGSKVRFMVIPDILKHAPMFKRLDARIKGKSGSLGVGRGRAAMRGK-----PPATGRGTG 458
RG+ ++++ I D + + A+ + GS GRG+ RG P GRG G
Sbjct: 62 RGNNIKYLRIQD--EVLSQVAKQQAQQRENRGSRFRGRGQRG-RGNYGHTAPNRRGRGRG 118
Query: 459 G 461
G
Sbjct: 119 G 119
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,931,892,944
Number of Sequences: 518415
Number of Extensions: 164931892944
Number of Successful Extensions: 1021520109
Number of sequences better than 0.0: 0
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