RadishBase

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Information for unigene UN01330

FASTA Sequence

Unigene ID: UN01330	Length: 1254		SNP
GATAACAAATAGAAGAAAATCATGGTAGATAAATTTGATAGTTTTTGTTAAATGTGAAAATAGGAAATATACATATCCCTAATAGG TAACTATAGAAAATTTATAAAGAAGTGGAGAACTTAATTTTAGAAAAACATATGTAACATCCGAAAATGCATATATATTATTCAGG AAAACTAATTCTCTACTTAGCACACTTGGATAAAAACTCAGAAAAAATACGACAGCTAACGGGTACACATGGTGGTTGCCTTGTTG GGGTAAAAGCAATGTTGTTTACTTTCATGTAGCTGATGCGGAAGAAAACTGTTCGCCGTTTTTAGTGTTTTGTCCATCTTCAACCT CAGGCCTCTGATCATTTCCGCAAGTACACTTGTTCGCTTGACGAACCTCAGGGGACGACACTGTGCCTAGCTTTAGGATATCGAGG CTCACCTCAGGCAACTTAGCGGCTTCCACTTCTTTATCTCCTAGATGCGGCGGCGTTTTACAGTATTTGTAGACCACGTAGAGTAT CATTTGGAGTGCACCGAGAGCAAAACCAAGCACATTAGGGAAAGCAACATAGATGTCCTTGAGAGCAAGACCATAAAGGAGCCATA CCACAGCACTGATTGTGAGGGTTAAGGATAAGCTAAAGGGCATGTACTCTACACTTCTTGTCTTTATTACTGTCCTGATTATGCTT AGAGGAGCAGCGAAAACACAGACGGAAAATCCGACACAGATTCCTCCGATGATCTTGGCACGTGTGGTTCCTTTTGCTAAGAATTG GCATAGAAGGAGAATCAGACAGAATCCTCCAAAGTTCATCAGAAGAAGCAACTTCACTGTCAACATCCGGGCTTTCTTGGGTGCGT ATGCAAGGAAGATAGATATGTAAATAGTTTCTATGAAGCATCCAAAAGAGTTGATGGTGACGAGGAGGAAAACATCTTTCTTTTGC GTTGCGTAGTAAAGCCAAAGTGTCGCGCTGAAGAGAGCCACAACGTAAGGAAGAGACTGAAACCCTTCTGTTGTCTTCTTCTTCCA AACCCTATAGAACGTTGGCACAGGAGAGAGGAACACAGCGAAGGAGATGACATTCCCCATCAAACCAAAGACAAAGGCCCATGTGT TGTGAGTGTCGAAGAGAGGCATGCTTTTCTTGTTTTGTTTAAATAAACTGTTTAGGTTTATAGAAGGAGGAACAAGAAGAGAGTTC GCACTTAGATTTGTAAGTGGTTTCTCTTAATATAAAAGCTGATGGCACCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_190443 Nodulin MtN3-like protein [Arabidopsis thaliana]	1338	2e-145
XP_002877629 nodulin MtN3 family protein [Arabidopsis lyrata subsp. lyrata]	1324	1e-143
NP_197755 MTN3-like protein [Arabidopsis thaliana]	1225	3e-132
XP_002877428 hypothetical protein ARALYDRAFT_484952 [Arabidopsis lyrata subsp. lyrata]	1219	2e-131
XP_002511126 conserved hypothetical protein [Ricinus communis]	856	2e-089

Swiss-Prot top hits (Blast detail)	Score	e value
Q8LFH5 Protein RUPTURED POLLEN GRAIN 1	358	5e-033
Q5EB14 RAG1-activating protein 1 homolog	222	3e-017
Q290X1 RAG1-activating protein 1 homolog	208	1e-015
Q7JVE7 RAG1-activating protein 1 homolog	200	9e-015
Q6NTJ7 RAG1-activating protein 1 homolog	199	1e-014

TrEMBL top hits (Blast detail)	Score	e value
Q9SMM5 AT3g48740/T8P19_250	1338	2e-145
O82587 MTN3 homolog	1225	2e-132
B9RAA1 Putative uncharacterized protein	856	1e-089
B9IFG9 Predicted protein	769	2e-079
B8BKP4 Putative uncharacterized protein	746	7e-077

Arabidopsis top hits (Blast detail)	Score	e value
AT3G48740.1 nodulin MtN3 family protein	1339	7e-148
AT5G23660.1 MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	1225	1e-134
AT5G50800.1 nodulin MtN3 family protein	819	1e-087
AT4G25010.1 nodulin MtN3 family protein	785	1e-083
AT5G13170.1 SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)	674	9e-071

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	2			10%


6	4			19%


11	4			19%


12	6			29%


10	4			19%


9	1			5%

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