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Information for unigene UN03324

FASTA Sequence
Unigene ID: UN03324Length: 1934  SNP
CTTTCATGCCTATTGGCGTTCCAAAAGTACCTTTTCGAAGTCCTGGAGAAGGAGATACATCTTGGGTTGACATATACAACCGACTT
TATCGAGAAAGATTGTTTTTTTTAGGCCAAGAGGTTGATACCGAAATCTCGAATCAACTTATTAGTCTTATGATATATCTCAGTAT
AGAAAAGGATACCAAAGATCTTTATTTGTTTATAAACTCTCCTGGTGGATGGGTAATATCTGGAATGGCTATTTATGATACTATGC
AATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCGCTTCAATAGCATCCTTTATCCTAGTCGGAGGAGAAATTACC
AAACGTATAGCATTCCCTCACGCTAGGGTAATGATCCATCAACCCGCTAGTTCGTTTTATGAGGCACAAACGGGAGAAGTTATCTT
GGAAGCGGAAGAACTACTAAAACTTCGCGAAACCATCACAAGGGTTTATGTACAAAGAACGGGCAAACCTATATGGGTTGTATCCG
AAGACATGGAAAGGGATGTTTTTATGTCAGCAACAGAAGCCCAAGCTTATGGAATTGTTGATCTTGTAGCGGTTCAATAAAAATAG
GAGCGATTTCATGCAAATCTACCATTGCTAATTTTATATCTTTTTAGATTAAAGGTTTAGTTTCATATTCTCTTCAATATAAAAAA
AATATATTGAAGAGAATCTTGAAGAGAAGTAATAAATAATGAGCCGGTTAGAACCCATCTAAACCAGCCCATTATTTATATGATTA
CGTATGCCAACCATTAAACAACTTATTAGAAATACAAGACAGCCAATCCGAAATGTCACGAAATCCCCAGCGCTTCGGGGATGCCC
TCAGCGACGAGGAACATGTACTCGGGTGTATACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGAT
TAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGA
AGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCG
TTCTAAATATGGGGTCAAAAAGCCAAAATAAAAGATTTGAGCCCTTATAAAAAGAAAACAGATTCTTGAACCCCTTTCACGCTCAT
GTCACGTCGAGGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAATCGATTAGTTAACATGTTGGTTAACCGTA
TTCTGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCCTTGAAAAAGATTCAACAAAAGACAGAAACAAATCCA
CTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTAGGCGGATCAACTCATCAAGT
TCCCATTGAAATAGGATCCACGCAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATA
TGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATG
GCAGAGGCAAATAGAGCGTTTGCACATTTTCGTTAATCCATGAACAGGATCTATATAGACACATAGATCCGTGGATCCATACATCT
CGATCCGAAAAGAATCAATAGAAAAAGAAAAAATCGGAATTGATCGATCTCTTTCTCGAAACAAACGAAAAGGAAAGAAAAGACGA
AACATAAATCATGGATCAACTAAGCCCTCTCGGGGACTTGCTTAAGAATAAGAAAGAGCAATCTCATGTAAATACCATGGAATAAG
GTTTTAGCCTATTCATGGGGGATTCCGTAAATATTCCATTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
YP_001123398 ATP-dependent Clp protease proteolytic subunit [Capsella bursa-pastoris]9891e-104
P56772 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase ClpP1; Short=pClpP9872e-104
ACY66251 ATP-dependent Clp protease proteolytic subunit [Brassica napus]9863e-104
YP_001123311 ATP-dependent protease subunit [Barbarea verna]9836e-104
NP_051083 ATP-dependent Clp protease proteolytic subunit [Arabidopsis thaliana]9828e-104

Swiss-Prot top hits (Blast detail)Scoree value
A4QKL7 ATP-dependent Clp protease proteolytic subunit9895e-106
A4QLL9 ATP-dependent Clp protease proteolytic subunit9895e-106
P56772 ATP-dependent Clp protease proteolytic subunit 19879e-106
A4QKD0 ATP-dependent Clp protease proteolytic subunit9833e-105
A4QKV6 ATP-dependent Clp protease proteolytic subunit9833e-105

TrEMBL top hits (Blast detail)Scoree value
D1L8R3 ATP-dependent Clp protease proteolytic subunit9862e-104
D2KLM7 ATP-dependent Clp protease proteolytic subunit9324e-098
B1A960 ATP-dependent Clp protease proteolytic subunit9298e-098
D3WB77 ATP-dependent Clp protease proteolytic subunit9298e-098
Q06R40 ATP-dependent Clp protease proteolytic subunit9298e-098

Arabidopsis top hits (Blast detail)Scoree value
ATCG00670.1 Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome. Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001).9832e-106
ATCG01240.1 30S chloroplast ribosomal protein S77753e-082
ATCG00900.1 encodes a chloroplast ribosomal protein S7, a constituent of the small subunit of the ribosomal complex7753e-082
ATCG00065.1 chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct loci on the chloroplast genome and is transpliced to make one transcript.6401e-066
ATCG01230.1 chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct loci on the chloroplast genome and is transpliced to make one transcript.6401e-066

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
197  13%
 
184  7%
 
211  2%
 
88  14%
 
129  16%
 
116  11%
 
75  9%
 
106  11%
 
67  13%
 
93  5%

Unigene MembersMember information