Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN04373

FASTA Sequence
Unigene ID: UN04373Length: 1362  SNP
GGATAAAAGGGCAAAGTTTGGCTTCTCTATGATCATATCTCAACACGAAGCATTATATCACTCCTCTCTATTATCTATCTCCTCTA
TATTTCTCTATCTGTTTTCTTGACTTGTTGGATATGGGAGAAGCCGTAGAGATCATGTTCGGAAATGGGTTCCCGGAGATTCACAA
AGATACTTCACCCATTCAAACCCTCCTCTCCAACCAGCAGGACTGCCATTGGTATGAAGAAACCATTGATGATGATCTCAAATGGT
CTTTTGCCCTCAACAGTGTGCTCCATACAGGAACTAGTGAGTACCAAGAAATTGCACTTCTGGACACCAAACATTTCGGCAAGGTG
CTTGTGATTGACGGGAAAATGCAAAGTGCAGAGAGAGATGAGTTTATCTACCATGAATGTTTGATCCACCCTGCCCTCCTTTTCCA
CCCCAACCCAAAGACTGTGTTCATAATGGGAGGAGGTGAAGGCTCTGCTGCAAGAGAAATACTAAAACACAAGACAATCGAGAAAG
TGGTCATGTGTGATATTGATCAGGAAGTCGTTGATTTTTGCAAGAGATTTCTGACCGTTAACAGCGAGGCTTTTTGTAACAAGAAG
CTTGAACTTGTGATCAAAGATGCAAAGGCTGAACTGGAGAAAAGGGAAGAGAAGTTTGATATCATAGTGGGTGATTTAGCAGACCC
AGTAGAAGGTGGACCATGTTATCAGCTCTACACCAAATCCTTCTACCAAAACATCCTCAAACCCAAGCTTACCCCTAATGGCATTT
TTGTGACCCAGGCTGGACCAGCAGGAATATTCACTCATAAAGAGGTCTTTACATCAATCTACAACACCATGAAACAAGTCTTCAAG
CACGTGAAGGCTTACACAGCACATGTGCCGTCGTTTGCGGACACGTGGGGATGGGTGATGGCATCGGACCAAGAGTTTGAAGTTGA
AGTGAATGAAATAGATAAACGAATCGAAGAGAGAGTGAAAGGAGAGTTGATGTATCTGAATGCTCCTTCTTTCCTTTCAGCTGCTA
CTCTCAACAAGACCATCTCTCTCGCGCTGGAGAAGGAGACGGAAGTTTATAGCGAAGAGAACGCGAGATTCATTCATGGACATGGT
GTGGCGTACCGGCATACTTGAAGAAGAACCGATGTCAGCTTCAAGATTAATACCATACCCATGTCCACACTCAAGAACCAGTCTCT
TTATTTTCTACATTGCTTGGGATTTCGTTTGCTTGTTCCTCAAGTTACTCCGGTTTTAATTTGGTTAAGAAAACTATGTTGTTTAC
TAAGAAATTAGACCCATCTTCATCATCAATATCTCCACTTTGTTATTAGTAAATTTTCCACACCAAATCTAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAB83654 spermine synthase [Arabidopsis halleri subsp. gemmifera]17173e-189
XP_002873952 spermine synthase [Arabidopsis lyrata subsp. lyrata]17164e-189
NP_568376 Thermospermine synthase ACAULIS5 [Arabidopsis thaliana]16985e-187
BAB83645 spermine synthase [Arabidopsis thaliana]16968e-187
BAB83647 spermine synthase [Arabidopsis thaliana]16932e-186

Swiss-Prot top hits (Blast detail)Scoree value
A4XKM9 Spermidine synthase4373e-042
Q57761 Probable spermidine synthase4365e-042
Q81JT0 Spermidine synthase 14312e-041
Q72X78 Spermidine synthase4312e-041
B6YXJ9 Probable spermidine synthase4312e-041

TrEMBL top hits (Blast detail)Scoree value
Q8W3K6 Spermine synthase17172e-189
Q9S7X6 AT5g19530/T20D1_5016983e-187
Q8W3K9 Spermine synthase16966e-187
Q8W3K8 Spermine synthase16931e-186
Q8VWK6 Spermine synthase16876e-186

Arabidopsis top hits (Blast detail)Scoree value
AT5G19530.1 ACL5 (ACAULIS 5); spermine synthase/ thermospermine synthase16982e-189
AT5G19530.2 ACL5 (ACAULIS 5); spermine synthase/ thermospermine synthase16669e-186
AT1G23820.1 SPDS1 (spermidine synthase 1); spermidine synthase3702e-035
AT1G23820.2 SPDS1 (spermidine synthase 1); spermidine synthase3692e-035
AT1G70310.1 SPDS2 (spermidine synthase 2); spermidine synthase3362e-031

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
86  18%
 
1110  30%
 
124  12%
 
108  24%
 
72  6%
 
191  3%
 
201  3%
 
211  3%

Unigene MembersMember information