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Information for unigene UN08838
| FASTA Sequence |
| Unigene ID: UN08838 | Length: 1312 |
| SNP | GGATCGCTAAATTTTCTGGTAATCCCTTCTCCAACGAGTCCTTTCTCTCGAGCTTTCGTCGAGCTCCTTTGACCACCATGGCGTCT
TGCTTACAAGCATCCATGAATTCTCTGCTTCCACGCTCTTCTCCTCCTTCTCTCTCTTTGAATTCATCTGGGAGGAAGGCCTTTCG
CGTTAAAGCCGCTGCCAAAATCCCTATGCCTCCGATGAACCCTAACGATCCTTTCCTCTCGAAGCTCGCTTCCGTCGCCGCGCAAT
CGCCGGAGAAACTTCTCGCTCGGCCGTTAAACGCCGATACGCCGCCGTATCTTGACATCTTCGATTCGCCTCAGCTCATGTCTTCT
CCTGCTCAGGTTGAGAGATCAGTGGCTTATAACGAGCACAGGCCAAGAACACCTCCACCAGATTTGCCATCTATGCTTCTTGACGG
GAGAATTGTTTACATTGGAATGCCTCTGGTGCCGGCGGTTACGGAGCTGGTTGTGGCAGAGCTGATGTATCTTCAGTGGTTGGATC
CCAAGGAACCAATATACATTTACATCAACTCCACAGGGACCACTCGTGACGATGGCGAGACGGTTGGAATGGAATCAGAAGGTTTT
GCGATATATGATTCCTTGATGCAACTTAAAAACGAGGTACATACAGTGTGTGTGGGAGCAGCCATAGGTCATGCATGTTTGTTACT
TTCAGCGGGTACAAAGGGTAAACGGTTTATGATGCCACATTCCAAAGCGATGATCCAGCAGCCTCGTGTGCCTTCTTCTGGGTTGA
TGCCTGCCAGTGATGTCCTGATTCGTGCCAAAGAGGTTATAACGAACAGGGATATACTTGTGGGACTACTATCAAAGCACACTGGG
AATTCCGTGGAGACTGTGGCTAACGTGATGAGAAGACCATATTACATGGATGCACCAAAAGCTAAAGAATTTGGAGTCATTGACAA
GATTCTTTGGCGTGGTCAAGAAAAGATTATCGCAGACGTTGTTCCTTCAGATGAATTCGATAAGAATGCTGGGATTAGAAGCGCAG
AACCAGTTTAATTTCAAATACTCTTTGCCTTAAATTCTCTGTTTCAGTGTGGACAACGTTAAATAGAATTACAAGCTCCCTTGGTT
GCGGGACTGCCTTGTTTCGAACCACGGGTAAAACTGTCAATCATGCGATTAGGAGAAACATATTAAAGATGATCTTCAAAAACTAT
GTGATGAAGTTGTAATGTGTTTCAAAAGCTTAAGTAAATGCAGTGTCGAACTCTCTCTTTTTTCTTTATCCCCTTCGATTTCAATA
TTGGAATTACAAACTTCCTTTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002892483 ClpP protease complex subunit ClpR3 [Arabidopsis lyrata subsp. lyrata] | 1503 | 2e-164 |
| NP_001184945 ATP-dependent Clp protease proteolytic subunit-related protein 3 [Arabidopsis thaliana] | 1503 | 2e-164 |
| NP_563836 ATP-dependent Clp protease proteolytic subunit-related protein 3 [Arabidopsis thaliana] | 1499 | 6e-164 |
| BAD44446 ClpP protease complex subunit ClpR3 [Arabidopsis thaliana] | 1495 | 2e-163 |
| BAD43698 ClpP protease complex subunit ClpR3 [Arabidopsis thaliana] | 1434 | 2e-156 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8L770 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic | 1499 | 2e-165 |
| Q9XJ35 ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic | 458 | 1e-044 |
| Q8LB10 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic | 443 | 7e-043 |
| P74466 Putative ATP-dependent Clp protease proteolytic subunit-like | 401 | 5e-038 |
| Q9L4P4 Putative ATP-dependent Clp protease proteolytic subunit-like | 375 | 5e-035 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RFA9 ATP-dependent Clp protease proteolytic subunit | 1267 | 3e-137 |
| C6T928 ATP-dependent Clp protease proteolytic subunit | 1223 | 4e-132 |
| A9PFT0 ATP-dependent Clp protease proteolytic subunit | 1213 | 6e-131 |
| B7FKZ0 ATP-dependent Clp protease proteolytic subunit | 1053 | 2e-112 |
| C5X0M7 ATP-dependent Clp protease proteolytic subunit | 987 | 9e-105 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G09130.1 ATP-dependent Clp protease proteolytic subunit, putative | 1499 | 2e-166 |
| AT1G09130.2 ATP-dependent Clp protease proteolytic subunit, putative | 1499 | 2e-166 |
| AT1G49970.1 CLPR1; serine-type endopeptidase | 458 | 1e-045 |
| AT4G17040.1 ATP-dependent Clp protease proteolytic subunit, putative | 443 | 6e-044 |
| AT5G23140.1 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7); serine-type endopeptidase | 253 | 6e-022 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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