Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN09426

FASTA Sequence
Unigene ID: UN09426Length: 1314 SSRSNP
TCATCTCATCTCAATTCTCACCATAGATCCAAACCTCCCAACCTTTTTTTCTTCCCGGAAATCACAAGAAAGAACAATCACGATCT
TCTATCTCCCCGGAAGAAGAAAAACAAACATGTGTAGTAAGATGGCGTTTACTCTGACAATCCCTCGATTTCACTCTCCAATTTCT
CGCAAACCCACCACCACCACCACTTGTTCATCTCCTCCTTCGAGGACACAGTCTGCTCACTTCAGCCATGAACGGTCCATTTCTCT
CAGACGAAGACTTTTCTTATTACCCGTCAAAGCCACTACCGATCAGTCAGGTCAGGTGGGTGGGGAAGAAGTTGACAGCAAGATCT
TACCTTACTGTAGCATCAACAAGAACGAGAAGAGATCAATCGGTGAAATGGAGCAAGAGTTTCTCCAAGCGATGCAATCATTCTAT
TACGAAGGCAAGGCTGTTATGTCTAACGAAGAGTTTGATAACCTTAAAGAAGAGTTGATGTGGGAAGGAAGCAGTGTTGTCATGCT
AAGTTCCGATGAACAAAGATTCCTTGAAGCTTCAATGGCTTATGTGTCTGGCAATCCAATCATGACTGATGAAGAATACGACAAGC
TGAAAATGAAACTAAAGATGGATGGAAGTGAGATTGTGTGTGAGGGTCCAAGATGCAGTCTTCGTAGTAAAAAGGTTTACAGTGAT
CTTGCAGTAGATTATTTCAAAATGTTCCTGTTGAATGTACCAGCAACCGTTGTTGCTCTCGGACTGTTTTTCTTCCTTGATGACCT
TACTGGTTTTGAAATCACTTACTTGCTCGAGCTTCCGGAACCATTCAGTTTCATCTTCACATGGTTTGCTGCGGTGCCTGCAATTG
TGTATCTGGCGCTATCACTCACCAAGCTGATCATCAGAGACTCCTTGATCTTGAAGGGCCCTTGTCCAAATTGTGGAACAGAGAAT
ACATCTTTCTTTGGAACAATTCTATCCATCTCCAATGATGGTTCCACCAACAATGTTAAATGCTCCGGATGTGGAACGGCGATGGT
CTATGACTCAAGTACTCGTTTGATCACATTACCAGAAGGAGGCAATGCTTAAACCCTATGGGCCAAGGTTTCGTTTCTCAGGGAGA
TGTATGTAAATTTGATACTAATAGATGAAGGAGGTGGAAAAATTAAGCAAAAGGGTTGTTTTGTGTGCTTCTATAATCTCTAGATG
TTTCCGTGTAGCTCTCGTTGACTTGTATTGTGTGTTGTAAGTAGATGTGAGGTGAAATCAGAGAAAGAACACCATGTGATTACTTC
TTTGGGGAATTTCGCTCTCACTAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_192933 PGR5-like protein 1B [Arabidopsis thaliana]14135e-154
XP_002874736 hypothetical protein ARALYDRAFT_490014 [Arabidopsis lyrata subsp. lyrata]13948e-152
NP_567672 PGR5-like protein 1A [Arabidopsis thaliana]13526e-147
XP_002869800 hypothetical protein ARALYDRAFT_492575 [Arabidopsis lyrata subsp. lyrata]13364e-145
NP_001078432 PGR5-like protein 1A [Arabidopsis thaliana]13348e-145

Swiss-Prot top hits (Blast detail)Scoree value
Q8GYC7 PGR5-like protein 1B, chloroplastic14132e-155
Q8H112 PGR5-like protein 1A, chloroplastic13523e-148

TrEMBL top hits (Blast detail)Scoree value
B9RBZ1 Putative uncharacterized protein12361e-133
C6TJX7 Putative uncharacterized protein12046e-130
A9PGK5 Putative uncharacterized protein11761e-126
B9GW41 Predicted protein11714e-126
B9GKR5 Predicted protein11697e-126

Arabidopsis top hits (Blast detail)Scoree value
AT4G11960.1 PGRL1B (PGR5-Like B)14141e-156
AT4G22890.1 PGR5-LIKE A13532e-149
AT4G22890.3 PGR5-LIKE A13532e-149
AT4G22890.2 PGR5-LIKE A13532e-149
AT4G22890.5 PGR5-LIKE A13352e-147

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
217  37%
 
193  16%
 
65  26%
 
121  5%
 
71  5%
 
81  5%
 
111  5%

Unigene MembersMember information