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Information for unigene UN09541

FASTA Sequence
Unigene ID: UN09541Length: 922  SNP
CAGTGAACAAAATTCTTGCTTAATGACACAAACAGAAGACTTGAGAATTTATTTCACCAAGCAAAGAAATTACATATATTTATTCG
ATCCAATTCTATTTTCCGGGAACAAAGTTGGTGGCGTAAGCCCAAGCATTGTTAGCCACAGGGTCCGCAACATGATCGAACAGATT
CTCTATTGGACCTTTACCAGTAACAATAGCTTGCACAAAGAATCCAAACATTGAGAACATTGCAAGACGACCGTTCTTGAGCTCCT
TCACTTTCAATTCTGAAAATGCCTCGGGGTCCTCGGCTAAGTTCAATGGGTCAAACGCCCCACCCGGGTAAAGCGGGTCAAGACCT
TCACCAAGAGGTCCACCTCCGATTCTGTACCCTTCGATTAAGCCCATAAGCACAACTTGAGAAGCCCAGATAGCTAAAATGCTTTG
CGCATGGATCAAGTTAGGGTTCCCGAGGTAATCAAGCCCTCCTTCTGAGAAGATCTGAGAGCCTGCCTTGAACCACACGGCTTCAC
CGAATTTGACACCGTTTTTCGAGAGAATCTCTGGGAATGTGCAGCCTAAAGCTCCTAACATTGCCCATCTGCTGTGGATTACTTCG
AGCTCACGGTTCTTTGCAAAGGTTTCTGGGTCAGCGGAGAGACCAGCGGTGTCCCAACCGTAGTCTCCGGGGTACTCACCGGTTAG
GTATGATGGTGTGTTCTCCGAGAATGGTCCTAAGTACTTGGGACGGTCTGGTCCGTACCAGATGCTCTGAGGAGTAGACTTGACGG
TACGGCGCATGAAGACGCGTCCACCACCGTTGGAAGCTCCTACTTTGCGGAGGAGATCGTTGGAGGGCTTCAAAGCCGTTTGACCG
GCGAAAGAGGAGTGCTGGATTGCTGATGTAGCCATTCTTTTTTGTTATCTAACTCCAAACAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ33772 unnamed protein product [Thellungiella halophila]14026e-153
NP_189406 photosystem II light harvesting complex protein 2.3 [Arabidopsis thaliana]13936e-152
XP_002875397 LHCB2:4 [Arabidopsis lyrata subsp. lyrata]13911e-151
XP_002875398 LHCB2:4 [Arabidopsis lyrata subsp. lyrata]13847e-151
AAD28771 Lhcb2 protein [Arabidopsis thaliana]13524e-147

Swiss-Prot top hits (Blast detail)Scoree value
P27494 Chlorophyll a-b binding protein 36, chloroplastic12751e-139
P27518 Chlorophyll a-b binding protein 151, chloroplastic12705e-139
P12062 Chlorophyll a-b binding protein 37, chloroplastic12607e-138
P12328 Chlorophyll a-b binding protein of LHCII type I, chloroplastic12402e-135
P27520 Chlorophyll a-b binding protein 215, chloroplastic12231e-133

TrEMBL top hits (Blast detail)Scoree value
Q9XF87 At3g2770013934e-152
Q9XF86 Lhcb2 protein13522e-147
Q9SYW9 Lhcb2 protein13487e-147
Q9SHR7 At2g05100/F15L11.213479e-147
Q9S7J7 At2g05070/F1O13.2013398e-146

Arabidopsis top hits (Blast detail)Scoree value
AT3G27690.1 LHCB2.3; chlorophyll binding13942e-154
AT2G05100.1 LHCB2.1; chlorophyll binding13484e-149
AT2G05070.1 LHCB2.2; chlorophyll binding13404e-148
AT2G34420.1 LHB1B2; chlorophyll binding10626e-116
AT1G29910.1 CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding10537e-115

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
111  4%
 
1913  52%
 
94  16%
 
183  12%
 
201  4%
 
211  4%
 
72  8%

Unigene MembersMember information