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Information for unigene UN09792
| FASTA Sequence |
| Unigene ID: UN09792 | Length: 768 |
SSR | SNP | GGGGTGTTTAGAGCATTGCAGAGATCATCACTGCTTGAAGGCGGCGTCTTCTTCTTCTTCTCACGCATCTCATCTCCGCTAATCAA
AATGTCTCTGGTCGCGAATGAGGAGTTTCAGCACATTCTCCGTGTGCTTAACACAAATGTCGATGGAAAGCAGAAGATCATGTTCG
CCCTTACCTCAATCAAGGGTATTGGGAGGCGTTTGGCTAACATCGTCTGCAAGAAAGCTGATGTCGACATGAACAAGAGGGCTGGT
GAGTTGTCTGCAGCTGAGATCGACAACCTGATGACGATTGTTGCTAACCCAAAGCAGTACAAGATCCCAGACTGGTTCCTGAACAG
GCAGAAGGACTACAAGGACGGGAAGTACTCCCAAGTTGTCTCCAATGCCCTTGACATGAAGCTCAGGGACGATCTCGAGCGTCTCA
AGAAAATCAGAAACCACCGTGGGCTGAGACACTACTGGGGTCTTCGTGTCCGTGGACAGCACACCAAGACAACTGGGCGCAGAGGA
AAGACTGTTGGTGTCTCGAAGAAGCGTTAAGCAAGATTACTTCTTTATCTGTTTTGATATATGTTTCTGCTTTGAACTAGTTTATG
TGACACTTTTGGATCTTCGAAATAGTTTGTTTGATACTTTTGGATCTTTGTGCTCTCTATCTCTCTTTTCCAGTGGTTTACATCTG
TTTTAACTTTAATTGTTTTTGAGTCTTTATCATGGCTTTGTCCCCTTCAACAGAGTTTTGAAGTGTTTATCATTCTCTCC
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_173692 40S ribosomal protein S18 [Arabidopsis thaliana] | 778 | 9e-081 |
| AAK43840 S18.A ribosomal protein [Arabidopsis thaliana] | 774 | 3e-080 |
| CBI28706 unnamed protein product [Vitis vinifera] | 767 | 2e-079 |
| XP_002307515 predicted protein [Populus trichocarpa] | 766 | 2e-079 |
| XP_002306780 predicted protein [Populus trichocarpa] | 761 | 9e-079 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P34788 40S ribosomal protein S18 | 778 | 4e-082 |
| Q8ISP0 40S ribosomal protein S18 | 661 | 2e-068 |
| Q8IT98 40S ribosomal protein S18 | 652 | 2e-067 |
| Q8JGS9 40S ribosomal protein S18 | 630 | 6e-065 |
| Q90YQ5 40S ribosomal protein S18 | 625 | 2e-064 |
| TrEMBL top hits (Blast detail) | Score | e value |
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| Q5PNZ9 At1g22780 | 778 | 7e-081 |
| B9H7W2 Predicted protein | 766 | 2e-079 |
| A9P8I9 Predicted protein | 761 | 6e-079 |
| B9SEC1 40S ribosomal protein S18, putative | 761 | 6e-079 |
| A9P8E8 Predicted protein | 758 | 1e-078 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G22780.1 PFL (POINTED FIRST LEAVES); RNA binding / nucleic acid binding / structural constituent of ribosome | 779 | 3e-083 |
| AT1G34030.1 40S ribosomal protein S18 (RPS18B) | 779 | 3e-083 |
| AT4G09800.1 RPS18C (S18 RIBOSOMAL PROTEIN); RNA binding / nucleic acid binding / structural constituent of ribosome | 779 | 3e-083 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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