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Information for unigene UN09864
| FASTA Sequence |
| Unigene ID: UN09864 | Length: 1372 |
| SNP | TTTTTTTGAGAACTGAACTGATTTTTTTTCTGCCTCATTTAACTTAGCAAAAAAATCCCAAAACTTGGGTTCGTAGAACAAAAAGC
CTTCAGCAAGTATGACGATAACAATGAAATCAGAAGAACAAAAAGAGAACCGGGTGAGAGATTACAAAAACAAAAGCAGACCAAAC
GGAGGCTGAAGGACCAGACCAGAGAGAGCCTTACTTTCCCAGAGTAGGGAAGTGTGCAGCGTCTTCAATCTTTGGTGCAGGCGCAG
CAGCCTTTCTCTCAGCTCCTCCTTTTGGTCCACGACCACCCTCGGCTCCACCTCTTGGTCCACGACCTCCCTCATCAGCTCCTCTT
GGTCCACGACCTCCTCTTCCACCACGGTAACCACCTCTGTACCTCTCTCCATTGGCAGGTTTCAGGAACTCGTTTATGCTCAACGA
CTTCTTGGTCTTCTCTTCCTTCTCAACTGGGCGCTTGTCCTTGTCTGTTCCCAGCTTGATGAAGACCTCATCGTTGTTGCTCTTTT
TGCTAGAGAGCTGTTGCATGGACTCAAAGACTTTGGTGTCAACCTTCCTCTCCTCAATCTTGGTTGCCTGCAGAGCTTTCCTCTTC
TCTTCCAAAACCTTCTCATACTCTTCAAGAGTCATCTCCTTGTCCTCAGGCTCTTTCTCTGCTTGAGCTTCCACAAGTGTCTCTTT
GTTAGCATCAGTTGCTTCACCTTCACCACCTTCCTTCTCAACAGCCACCACTGTTGTGGATTCTTCAGTCACCGGAGGAATCTCAT
CCTCGATGGTTCCCCAGTTGCCACGGCCAGCACCATCACGTTTGAACTCATTTCCGTGACCGGTTCCACTGTGACGTTCAAAGTTC
CTACGAGGGCGCTCTACGTCACCAGAATCTCCGTGGCGACCACCACCGCGTCCACCACGTTGGTATCCACCACGTCTCCCTGCATC
TCCTCCTTCAGAGCGTCTGTAGCCTCCAACGTAGCCGTTCTCATTAGCAGGAGCATCACTGTTCCTGGATTCCCTGTTGAATCCAC
CACTTCTTCCACGGCCACCACCACGTGGTCCACCATTGCGACCTCCTCTGGCTTCCCTCACAGCTTGGGAAGGAGGAGTGGGCTTA
GTGGGCAGCTTAGCAGGCTGAGCTGGAGCAGCTTTCTCAACCTTCAATGGCTTAGCAGCAGCGAGCAGGGTTGGATCCTCTGTGTC
ATCGTCCAACAGATCGAAAGGGTTCAAAGTCGTCATTTCACAAGACCAACTAGTCCCCGAGGTTATTGTTTTTGAAGATGAAAACC
CCAAAAAAAAAGAATCAGAAAATAGAAGATATGGTTCGGACAGAACCAAACTAAGTGTAGGGAGAAAGAGGAAGAAGCTGCG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABD65145 nuclear RNA binding protein, putative [Brassica oleracea] | 1319 | 4e-143 |
| ABD65067 nuclear RNA binding protein, putative [Brassica oleracea] | 1311 | 4e-142 |
| XP_002870099 hypothetical protein ARALYDRAFT_493124 [Arabidopsis lyrata subsp. lyrata] | 1039 | 1e-110 |
| ABD64914 nuclear RNA binding protein, putative [Brassica oleracea] | 916 | 2e-096 |
| XP_002863351 hypothetical protein ARALYDRAFT_494257 [Arabidopsis lyrata subsp. lyrata] | 884 | 1e-092 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9W1V3 rRNA 2'-O-methyltransferase fibrillarin | 133 | 6e-007 |
| Q99069 Glycine-rich RNA-binding protein 1 (Fragment) | 132 | 8e-007 |
| Q8I1F4 rRNA 2'-O-methyltransferase fibrillarin | 131 | 1e-006 |
| A4X4N7 Translation initiation factor IF-2 | 126 | 4e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2A999 Nuclear RNA binding protein, putative | 1319 | 3e-143 |
| Q2A9H4 Nuclear RNA binding protein, putative | 1311 | 3e-142 |
| Q2A9V8 Nuclear RNA binding protein, putative | 916 | 2e-096 |
| Q2A9M2 Nuclear RNA binding protein, putative | 867 | 8e-091 |
| B6SHC5 Plasminogen activator inhibitor 1 RNA-binding protein | 839 | 1e-087 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G17520.1 nuclear RNA-binding protein, putative | 1139 | 1e-124 |
| AT5G47210.1 nuclear RNA-binding protein, putative | 978 | 6e-106 |
| AT5G47210.3 nuclear RNA-binding protein, putative | 839 | 8e-090 |
| AT4G16830.1 nuclear RNA-binding protein (RGGA) | 833 | 4e-089 |
| AT4G16830.3 nuclear RNA-binding protein (RGGA) | 704 | 3e-074 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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